barSeed - Barley Seed Development Database

Probe CUST_23956_PI390587928

Source Contig U35_41835

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23956_PI390587928	Hv_44K_v2	ACTTGGTCCTCAGGCTCAGGGGTGGATCAAGGAGCGTGTTGAGGAGAAAGAAGGCATTCC	318	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.298	0.361	0.930	1.504	1.062	1.474
Raw	2110.753	3832.970	9013.583	22570.923	5593.577	8614.147

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50842.2	335	2e-24	105 - 164	100	60 / 60	plus	ABC01063
Harvest21	ABC37086	475	3e-25	319 - 378	100	60 / 60	plus
Harvest35	U35_41835	475	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (475 bp)

>U35_41835 475 Hv_44K_v2
GAGAAAGGATTTTTCGTTTCGTCTTCGCCTGCTTCCGCTCCCTGCTTCGTCGTCCTCACG
CGACCAGCTTGACTCCCTCCCCCCCGCACGCGCGAGCAGCAGGGGAGGGCGAGAAGATGC
AGATCTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACA
CCATCGACAACGTCAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCGGACCAGCAGC
GTTTGATATTTGCTGGCAAGCAGTTGGAGGATGGACGCACACTTGCTGACTACAACATTC
AGAAGGAGTCGACTCTTCACTTGGTCCTCAGGCTCAGGGGTGGATCAAGGAGCGTGTTGA
GGAGAAAGAAGGCATTCCCCCTGTGCAGCAAAGGCTGATTTATGCTGGCAAGCAGCTTGC
AGATGACAAGACTGCCAAGGACTACAACATCGAAGGTGGCTCGGTCCTCCATCTT

Homology of Contig U35_41835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25320.1	154	3e-53	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi4g30470.1	154	1e-53
Arabidopsis v10	AT1G31340.1	156	1e-53	\| Symbols: RUB1, NEDD8, ATRUB1 \| related to ubiquitin 1 \| chr1:11218076-11219417 REVERSE LENGTH=156