barSeed - Barley Seed Development Database

Probe CUST_23949_PI390587928

Source Contig U35_27549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23949_PI390587928	Hv_44K_v2	ACAATTACCATAACACAAGGTATGACGTAACAGCATTCCAGCGTCATGGGACTCAGCATG	474	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.167	1.622	1.282	0.893	0.375	0.343
Raw	21.953	43.948	32.789	36.070	3.550	3.851

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374966	2324	2e-24	1693 - 1752	100	60 / 60	plus	ABC42964
MLOC	MLOC_38133.2	1360	2e-24	785 - 844	100	60 / 60	plus	ABC42964
MLOC	MLOC_38133.1	1594	2e-24	934 - 993	100	60 / 60	plus	ABC42964
JLOC1	JLOC1_24772.1	1447	8e-25	799 - 858	100	60 / 60	plus
Harvest21	ABC24140	601	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_27549	601	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_27549 601 Hv_44K_v2
CTGCACTGCAAATGTTCAAGAACCCACAGGGACACAATAATCAACTTCAGCAACAAAATA
AAGTGCTTCCGCAGGTGGGTACAACAAAAACTTTCAGCATACTTGGTCAGGCCCCTTGCC
TTCAGTATGGAGGATCAGGGAATGCAGTTCAGCAGCAGAAATTATCAAAACCAACTCCTA
CCGAGCAGATCAGAAACCAGTCACAGCCCCTCAAACATGAGCACCAAAATTTAGTGCTTC
CACAGGAGGATGCAAAGAAGGGAACTAACAAAGTACATTCCATTGATCACGGCAAGGCCC
CTTGCCTTCAGTATGTGGGATCAGGGAACGCGAGGCAGCAGCAATCATCAAGGCTAGCAC
TTCCACAGCAGATCAAAAATCCACCACAGCCCCCCAAACATCAACACACTGAAGTGCTTC
GGCAGGAGGATGGAAATAGAACTTACAGAGTAGAGCCCGTTGATCGTCAGAATAACAATT
ACCATAACACAAGGTATGACGTAACAGCATTCCAGCGTCATGGGACTCAGCATGCAAAGA
CACACCAGCATGGCTCCAACGGCCATCCATATGCTCACGTTGATAGCCAATGGCATCAAC
C

Homology of Contig U35_27549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None