barSeed - Barley Seed Development Database

Probe CUST_23926_PI390587928

Source Contig U35_41845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23926_PI390587928	Hv_44K_v2	GCTCTAGGCTTGTTTAGGATTTCATACCAGGTTGTTTAGCTATCTATGGTGCTATATATT	356	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10351.4	2059	2e-24	1941 - 2000	100	60 / 60	plus	None
MLOC	MLOC_10351.1	2726	2e-24	99 - 158	100	60 / 60	minus	None
MLOC	MLOC_10351.6	2491	2e-24	46 - 105	100	60 / 60	minus	None
MLOC	MLOC_10351.5	1988	2e-24	46 - 105	100	60 / 60	minus	None
MLOC	MLOC_10351.2	2924	2e-24	99 - 158	100	60 / 60	minus	None
MLOC	MLOC_10351.3	2444	2e-24	99 - 158	100	60 / 60	minus	None
JLOC1	JLOC1_6770.9	2390	8e-25	2015 - 2074	100	60 / 60	plus
JLOC1	JLOC1_6770.8	2344	8e-25	1969 - 2028	100	60 / 60	plus
JLOC1	JLOC1_6770.7	2287	8e-25	1912 - 1971	100	60 / 60	plus
JLOC1	JLOC1_6770.6	2636	8e-25	2261 - 2320	100	60 / 60	plus
JLOC1	JLOC1_6770.5	2703	8e-25	2328 - 2387	100	60 / 60	plus
JLOC1	JLOC1_6770.4	2629	8e-25	2254 - 2313	100	60 / 60	plus
JLOC1	JLOC1_6770.3	2280	8e-25	1905 - 1964	100	60 / 60	plus
JLOC1	JLOC1_6770.2	2696	8e-25	2321 - 2380	100	60 / 60	plus
JLOC1	JLOC1_6770.1	2347	8e-25	1972 - 2031	100	60 / 60	plus
Harvest21	ABC37098	443	3e-25	357 - 416	100	60 / 60	plus
Harvest35	U35_41845	443	3e-25	357 - 416	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_41845 443 Hv_44K_v2
GGGAAGATAAAGAGGAATCAGATGGATATGATTCTCCAGCCATGGCCGAGGATGTTCCTG
ATTTCGCCTTACATGAGTCATACACACTTGGAGAAGGCTTCTCCACTGGATACCTTGAGG
AGGTGTTGCGCAGCTTTCCACTGAATGAAGATGGCCAGAATAAATCAGGTGATGCCCTTA
ATAATGGTGAAGCAAGTGATGGGGAGTTTGAAATTTTCGAACAGCCTAGTGACGATGAAG
AGTATTCCGATGGTTAGTTGGGCCTTTTTGGGAAGTGGCAAGATATCCTGAGGTTAAATT
TTATGGGCCGTTGTCGACAGTACTTTGTTCATTAGATTTTCTTACTTATTGTACAGGCTC
TAGGCTTGTTTAGGATTTCATACCAGGTTGTTTAGCTATCTATGGTGCTATATATTTATC
CTTGTTAACATGATATTGGATGT

Homology of Contig U35_41845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None