barSeed - Barley Seed Development Database

Probe CUST_23913_PI390587928

Source Contig U35_19789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23913_PI390587928	Hv_44K_v2	TACAAAAGCGACTTCCAATGGTGGTAGCTAATCCAGATTATGTCACTGTTGAAGCTCGAG	768	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.246	0.429	1.222	2.061	0.808	1.365
Raw	56.767	158.516	389.241	1094.718	142.661	260.629

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370066	1159	2e-24	619 - 678	100	60 / 60	plus	ABC13104
MLOC	MLOC_13913.1	1050	2e-24	477 - 536	100	60 / 60	plus	ABC13104
JLOC1	JLOC1_9463.1	1105	8e-25	502 - 561	100	60 / 60	plus
Harvest21	ABC13104	1297	3e-25	769 - 828	100	60 / 60	plus	ABC13104
Harvest35	U35_19789	1297	3e-25	769 - 828	100	60 / 60	plus

Contig Sequence (1297 bp)

>U35_19789 1297 Hv_44K_v2
CAACCAGCTAGCCTGTATCCGTGTCCACGGCTACGATGGCCGTGGTGGCCGGCGAGACGC
CGCAGTCACGCGGCTGTATATGCCGCTCGTTCGCTGGTACTCGGCCCAGCCACTACCTGC
TAGGCGTCCTCGTTGCCTTACCCTTCCAAAGGAGCTCCTCCATCGCCTCCACTCTCCGCA
GCCCAGCCTCCACCTACCGCAGCAGCAAGTGCTCTCGTCGCGCGGCGGCGGCGGCGGGGA
GGATGTCATCGGCGCCGGCGCCGGTGTTCGAGAGGATGGCCGGGATCCGACCCCTCGCCG
AGTCCGGCCGCTTCAAGGCATGGTTCCTGGACCAGTTCGGTGTTCTTCATGACGGGAAGA
AACCCTACCCTGGCGCCATTTTGGCATTGGAGAAGCTCGCTGGGAATGGCGCCAAGATGG
TGATAATCAGCAATTCCTCGAGGCGGTCGTCTGTAACCATGGAGAAGCTGCAGAGCCTTG
GGTTTGACACGTCTTGTTTCCTCGGGGCGATCACCAGCGGAGAACTCACCCATCAGTACC
TTCACAAGAGGGACGACCCATGGTTTGCAGCTCTGGGAAGGAAGTGTGTCCATCTGACAT
GGGGCAATCGAGGTGCAATTTCTCTAGAGGGACTTGGTTTGCAAGTTGTGAGCAATGTTG
ACGATGCAGAGTTTATACTAGCTCATGGCACTGAAGCCCTGGGTTTACCTTCTGGTGATC
CACTTTCGAAAAGTCTTGAGGAACTTGAGCAGGTTCTAGTGCTTGGTATACAAAAGCGAC
TTCCAATGGTGGTAGCTAATCCAGATTATGTCACTGTTGAAGCTCGAGACCTGCGTGTCA
TGCCTGGCACTCTGGCAGCAAAATATGAGAGTCTTGGTGGTGAAGTAAAGTGGATGGGGA
AGCCTGATAAGGTTATCTATACATCAGCAATGTGCTTAGCAGGTGTTGAAGCACACGAAT
GCATCACCGTGGGAGATTCGCTGCACCACGACATCAAAGGCGCAAATGGGGCAGGAATGG
CATCTGCGTTCATCACTGGAGGGATCCATGCGGCTGAACTTGGACTAGTTGAATTCAGAG
AAACTGCTGGTGATGACGCCATCAGTGCGTTGTGTTACAAGCATAGCTCATACCCATCTT
ACGTTTTGCCTTCATTTGCATGGTAGAAACACGGTACACCGTTTAATCAGGATAGTGATA
GCGGTCCAGCGTAACCATACTCTTTTGAATTGTCAAAGAGAGCATCAAGACCGCGCTAAA
TTGTTAGTGTTATGTGTTTTCCGGAAATAAAACAATG

Homology of Contig U35_19789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g42950.1	309	0.0	protein\|haloacid dehalogenase-like hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi3g41860.1	309	0.0
Arabidopsis v10	AT5G10460.1	306	1e-128	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:3287822-3289844 FORWARD LENGTH=306