barSeed - Barley Seed Development Database

Probe CUST_23910_PI390587928

Source Contig U35_19792

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23910_PI390587928	Hv_44K_v2	TTAGTTCTTGGGATTGTCTATGTCCAGGAAGCTGAGAGAAAAATACCACTCAACTATGCT	1085	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252538.1	1984	2e-24	1083 - 1142	100	60 / 60	plus	ABC12543
MLOC	MLOC_25162.3	722	2e-24	606 - 665	100	60 / 60	plus	None
MLOC	MLOC_25162.1	784	2e-24	668 - 727	100	60 / 60	plus	None
JLOC1	JLOC1_17235.2	784	8e-25	668 - 727	100	60 / 60	plus
JLOC1	JLOC1_17235.1	725	8e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC11271	1144	1e-24	1086 - 1144	100	59 / 59	plus
Harvest35	U35_19792	1145	3e-25	1086 - 1145	100	60 / 60	plus

Contig Sequence (1145 bp)

>U35_19792 1145 Hv_44K_v2
TCGTCTAGCTTTAATCACCTGGAAAAACCCACCATCCACTCGTCTCCTTCCTCCGCCATC
GTTCCCGCGGCACCATGGCCACGGCGACACCGCAGCAATGCTGCCTTCCGGCCCGCGCGC
TCCCTCCTCCCACCTCCGCTCCCCTGCGCCTACGCCACCTCACCAGAGCAGCCTCCTCCT
TCCACTTCCCGGGCCGCCGCACGGCAACGGCAAGAAGGAGAGGAAGAGCCGCCTTCGCCT
TCTCCCCCAGATGCACGTTGGAGACGGGTGGCCCGGCCTTTGATCCTCTAGGGCTCTACA
GGGAGGACCCCTCCAGTTCTGATTATCAGTCTCCCTTCTTGACATTTTTCGGTGTCCTCT
CTCCAGTGTTCGGGAGCTCCAGTGGATCCAGGAAAGAGAAGTCATCCTATGGCCGGGGAG
CAGCAGCTGCAATGGAGGACAGTACTATTGATTTTGGTGACTTCTTCAAGGGTCCTCTAC
CTGGGAAGTTTTTGAAGCTCCTTGGGTTTTTGGCATTGTCTCGACTTGGTGTGTATATAC
CTTTGGGTGGAGTGAACCAGGCAGCTTTTGCTGGTAATCTTGACCAGAACAGTCTGCTGG
GCACTTTAGATTCTTTTTCTGGTGGAGGTATTGGCCGGCTTGGAATATGCTCCCTCGGCA
TTGTTCCGTTCATCAATGCACAGATTGTGTTTCAGCTCCTTACTCAGCTTTACCCGAAAT
TGCAAGAGCTTCAGAAAAAAGAAGGGGAGGCAGGTAGAAAAAAGATTCTTCAGTACACAA
GATATGCATCTGTTGGTTTTGCAATTGCCCAGGCTATCGGGCAAGTTCTTTTTCTTCGTC
CTTATGTTAATGACTTCAGCACAGAATGGGTACTAACATCTGTGACTCTATTGACACTTG
GATCGGTGTTCACAACTTTCCTTGGTGAAACAATATCTGAGTTGAAACTCGGGAATGGAA
CATCTCTTCTTATATTTACAAGTATAATATCGTATTTGCCTGCATCATTTGGAAGGACAG
TTGCAGAGGGATTTCAAGCAGGCAATTATGTTGGACTTCTCACAATCATATTGTCATTCT
TTTTCTTAGTTCTTGGGATTGTCTATGTCCAGGAAGCTGAGAGAAAAATACCACTCAACT
ATGCT

Homology of Contig U35_19792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g15460.1	557	2e-147	protein\|preprotein translocase subunit secY, putative, expressed
Brachypodium v1_2	Bradi3g19100.1	549	7e-168
Arabidopsis v10	AT2G18710.1	551	2e-117	\| Symbols: SCY1 \| SECY homolog 1 \| chr2:8112231-8114452 REVERSE LENGTH=551