barSeed - Barley Seed Development Database

Probe CUST_2390_PI390587928

Source Contig U35_6380

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2390_PI390587928	Hv_44K_v2	AATGTTGGTGAACCTGCAAGCTATGTGCTGCTCAATCAGTCTGAGAGCAGTGATGTATCT	1493	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.810	6.521	1.251	0.722	0.138	0.197
Raw	4212.890	5362.825	835.073	832.068	52.493	80.522

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76192.2	2256	2e-24	58 - 117	100	60 / 60	minus	None
MLOC	MLOC_76192.3	2344	2e-24	41 - 100	100	60 / 60	minus	None
MLOC	MLOC_76192.1	2516	2e-24	87 - 146	100	60 / 60	minus	None
JLOC1	JLOC1_50807.4	2531	8e-25	2274 - 2333	100	60 / 60	plus
JLOC1	JLOC1_50807.3	2476	8e-25	2219 - 2278	100	60 / 60	plus
JLOC1	JLOC1_50807.2	2297	8e-25	2040 - 2099	100	60 / 60	plus
JLOC1	JLOC1_50807.1	2354	8e-25	2097 - 2156	100	60 / 60	plus
Harvest21	ABC13775	1560	3e-25	1494 - 1553	100	60 / 60	plus
Harvest35	U35_6380	1560	3e-25	1494 - 1553	100	60 / 60	plus

Contig Sequence (1560 bp)

>U35_6380 1560 Hv_44K_v2
CTGACGGCGGGTACACTGGCTTTGCAATAGTCCGTTTAACAAGGATTGGATCGGGTTCAA
GGATGCCTTGGGATTCCACAACTACTACAAATCATATCATCTGGGTAAAACGGATTGGGA
GGCAAATAAATGTGGCAAGTACATGTTCGCTTGGCTGGCAAAAGAGGAGGATTACAAAGC
CGATGATCCAGTTGGCAAGTTCTTGTCAGAAAATGGTGATCTCAAGACAGTGGCTGAACT
GCAACAGGAGATGTCCCGCAAGACTGACACTCTCATAACTAATTTGACGAGCCAGATTAG
TGCTAAGAGCAAGTACTTGATGGAACTTGAGTGCAAGTGTAATCAGATGGATCTTGCTCT
TCAAAGGGCCATGGAAGATGGCGACTCGCTGGACCAACGCTACAACGAAGAAATGCGAAA
GATGCAGTCAACTGCTCGTGAACATTCGCTGAAAATTTTCCATGAGACTGATCAGCTGAG
AAAGCAGTTGGATGAGAAAGAGAACGACATCAAAAGGAGATCAAAGCAACTAAGTGAAAT
AGTTGCTCAAACTGACATGGAAAGAAGAAAATTGGAGAATGAGAGGAAGAAGAATGATGG
TCAAAACGACTCCCTTAACATGGCCAGAATTGAGCAAGAAAAAGCCAATGAAGGTGTGCG
AATTCTTGTTGAGAAACACATGAAAGAGAAGGAAGCTGCTCTGAACAAAATCTTGCAGTT
AGAGAAGCAGCTGGATGAGAAGCATCAGCTGGAGCTGGATATTCAACAGCTTAGAGGCAA
ACTGGAGGTGGTGAAGCACATGGAGGGAGAGGGTGTCGATGTGAAGAAGCGTACCGAAGA
GCTGAATAGGGATCTGCAGGATAGAATTGACGCAATGGAAGACCTGGAAGAGCTAAATCA
AACTCTGATTATCAAGGAAAGGATGACCAATGATGAATTGCAAGATGCAAAGAAGGAGCT
TATTTTGAGCTTGGCGGATCTGTTGGGCCCGCGTAGCAACATTGGAATCAAGAGGATGGG
TCAGGTGGACGAGAAGCCGTTTGTTGAAGCTTGCAAGCCAAAGTATGGCGTGGAGGCGGA
CACAAAAGCTCTTGAATTATGCTCCATGTGGCAAGACAATATGAGGGATGCCAATTGGCA
CCCTTTTAAGATAGTGACTACAGGTGAAAAGTCTGAGCAAATCATCGACGGAGGCGACGA
GAAGCTGGTGGGGTTGAAGGAGGAGCTGGGCGAAGAGGTTTACAAGGCTGTGACCACCGC
GCTGGTGGAGATGAACGAGTACAATGCCAGCGGCAGCTACGTGGTCTCAGAGCTGTGGAA
CAACAAAGAGAACAGGAAGGCTAGCATGGGAGAAGTGGTGGAGCATATCCTCAAGCAGTG
GAAGGCGAAACGTAAGAGGTGATAAATGTATCCTACTACATTCCTGCTACTCGAACAAGC
TAAGGTTTTCATTTTGGGGATCGGAGAAGACTTCGCGACTGTGCCCTTGTAATAATGTTG
GTGAACCTGCAAGCTATGTGCTGCTCAATCAGTCTGAGAGCAGTGATGTATCTCCCCTTT

Homology of Contig U35_6380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g19130.1	629	0.0	protein\|transcription factor X1, putative, expressed
Brachypodium v1_2	Bradi3g16980.1	734	0.0
Arabidopsis v10	AT1G15910.1	634	4e-118	XH/XS domain-containing protein \| chr1:5465951-5468723 FORWARD LENGTH=634