barSeed - Barley Seed Development Database

Probe CUST_23905_PI390587928

Source Contig U35_19797

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23905_PI390587928	Hv_44K_v2	TACCTTATTACATACGGAGCACTCCCTCCGTTTCTAAATATAGAGATTTTACTAGAAGAC	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369185	1271	9e-22	1217 - 1271	100	55 / 55	plus	ABC16572
JLOC1	JLOC1_797.2	2832	8e-25	2709 - 2768	100	60 / 60	plus
JLOC1	JLOC1_797.1	3785	8e-25	3678 - 3737	100	60 / 60	plus
Harvest21	ABC16572	621	3e-25	24 - 83	100	60 / 60	minus	ABC16572
Harvest35	U35_19797	665	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_19797 665 Hv_44K_v2
AGTGCACTTGCTGCCATACTTGACAACTGCCCCCACCTTGAGTCCCTTGATCTGCGCCAG
TGCTTCAACATCCACATCGACGCAGAGCTGCGGGCTAAGTGCGCAAGGCTTAGAGACGTG
AGGCTACCGAAGGACTCGACCAACGACTATGATCACGAGGCGTACATTGAGACGCTCGAG
CTGAATTCCCTTCCACTTCTTTTTGCCCACGATGGTGTTTTTACACAGCAATACCCCTTC
CATGGATCTATTGACAGTGACGAGGATGACCAGGAGGATCAGGATCTGGACGTAGCTCTT
GGTCATTTGGCTTTATGATAGATGGGTTACCAATGGGCATGTGCTGATCGTCTATGGCAA
CTCAGAGAAGTTTGCAATGGTCATCTAGAGCCCATAAACCAGTCCTGTTTATGGTACAAG
TCGAACATGTCCGTGTGTGCATGTCTTCCATGATAAGAAGGCGCGGCGGATTCGGTTCCT
TTTTGTGTTGGGAATTTTGCTAGCGTTGTCTTCTCCTTTGTAACCAGTATGTATTATGTA
CCTTATTACATACGGAGCACTCCCTCCGTTTCTAAATATAGAGATTTTACTAGAAGACTA
AAAAAAAAAAAAAAAAGCGGCCGCTCGAGCATTTTCGAAAGGGCCCAATTCGCCCTATAG
TAGTG

Homology of Contig U35_19797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None