barSeed - Barley Seed Development Database

Probe CUST_238_PI415269222

Source Contig TA41645_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_238_PI415269222	Hv_44K_v2	GTACTATTTTCAAATCTGATAGTTGCTCCAGAGGCTTGATGTATCATTCTGAAATGTTCT	1126	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.756	3.120	1.224	0.722	0.343	0.264
Raw	94.476	128.389	42.996	40.265	5.957	4.508

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3384.1	2673	2e-24	2406 - 2465	100	60 / 60	plus	ABC11609
JLOC1	JLOC1_2038.1	3239	8e-25	3009 - 3068	100	60 / 60	plus
Harvest21	ABC11609	1339	3e-25	1102 - 1161	100	60 / 60	plus	ABC11609
Harvest35	U35_34116	784	3e-25	360 - 419	100	60 / 60	minus
Harvest35	U35_19069	1364	3e-25	1127 - 1186	100	60 / 60	plus

Contig Sequence (1189 bp)

>TA41645_4513 1189 Hv_44K_v2
CTGGTTACTCCACATCTCCTCTCAAGCACTGAAGCGCAGCTCCTCTTTCACACTCTCCCC
CGCCTCACTTCACCGAGGCGCACGGACGAAAAGCTGCTTGCTGGCTGCTGGGAGCGAGCC
ATGGCTCCCCCGCTCCTCCTCGTCCTCTTCCTCCTCCTCCTCCCCGCCATCGCCGCCGGC
CACCAGCACCCCTCCTCCTACGGCTCCTCCGCGCTCTCCGAATGGCGCAACGCCAAGTCC
TCCTACTTCGCCGCCGACCCCGGCGACGCCATCGGTGGCGCGTGCGGGTTCGGGGATCTG
GGGAAGCACGGGTACGGGATGGCGACGGTGGGGCTGAGCACGGCGCTGTTCGAGCGCGGC
GCCGCCTGCGGCGGCTGCTACGAGGTCAAGTGCGTGGAGGACCTCAAGTACTGCCTCCCC
GGCACCTCCATCGTCGTCACGGCCACCAACTTCTGCCCGCCCAACTACGGCTTCCCCGCC
GACGCCGGCGGCGTCTGCAACCCGCCCAACCACCACTTCCTCCTGCCCATCCAGGCGTTC
GAGAAGATTGCGCTCTGGAAGGCCGGCGTCATGCCCATCCAGTACCGCCGCGTCAAGTGC
CTTCGCGAAGGCGGCGTGCGGTTCTCAGTCTCTGGGAAGAGCTTCTTCTTCACAGTCCTA
ATCAGCAATGTCGGTGGCGCTGGTGATGTCAGATCAGTGAAGATCAAAGGAACAGACTCT
GGCTGGCTCGACATGGGCCGCAACTGGGGCCAGATATGGCACATCAACTTAGATCTAACA
GGGCAGCCGGTATCCTTTGAGCTCACCTCGAGTGATGGCACGACGATGACGAATTTTAAC
GTCGTGCCCAAGGATTGGGAGTTTGGCAAAACATACACCGGCAAGCAGTTCCTTCTCTAG
AAAATTATTGATCGCGACTTACAATTTCTCAAAGAAGAAAAATCATCCTATGAGTTGGTT
GTAGTACTGTATATCTTTCTGAGGAACAAGGTTATTATTAGGAAAGGAATATAATCTCTA
CTGTACATTCCTCTGAGGAACGAGCTGATTATTAGGACAAATATCAGTTTAGTGCAGAGC
CTCAGATAGTTGTTCTACATACTACATGCGCTTGTAATTGTCGGATGTACTATTTTCAAA
TCTGATAGTTGCTCCAGAGGCTTGATGTATCATTCTGAAATGTTCTGAT

Homology of Contig TA41645_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g49410.1	258	3e-163	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi5g19340.1	258	8e-171
Arabidopsis v10	AT3G03220.1	266	4e-115	\| Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1.22, EXPA13 \| expansin A13 \| chr3:742655-743975 REVERSE LENGTH=266