- Probe CUST_23899_PI390587928
- Source Contig U35_30104
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23899_PI390587928 | Hv_44K_v2 | TGCTGATTATGGGACGGAAAATGTGCGCTCTACACAGCCAAGTATTGGGCAAAATCCTAT | 238 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.794 | 0.784 | 0.597 | 1.757 | 1.438 | 2.219 |
| Raw | 2.967 | 5.092 | 3.637 | 26.859 | 6.083 | 11.455 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65933.1 | 1272 | 2e-24 | 397 - 456 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_43423.1 | 1254 | 8e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29821 | 315 | 3e-25 | 239 - 298 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30104 | 315 | 3e-25 | 239 - 298 | 100 | 60 / 60 | plus |
Contig Sequence (315 bp)
>U35_30104 315 Hv_44K_v2 CCCGGGTAGATCCTGTAGAGTTGGTAGAGTTTCCATGGCAAAGCAGTCAATCTAGGTAAG AAATCTAGTGAAAAAACTAGGAAGAAGAGAAAAGAGTCTTACGAGGCAACAGTATCAGCC AGGGCGTGAGTAGCGGCAACAAAAGAAAGATGATTGATCTTAATGAGTTGCCTCCTTATC TCAATGAACTTCCTTGTGATATGGATCATCATCAACCCAGCATACCACGAGGAGATAATG CTGATTATGGGACGGAAAATGTGCGCTCTACACAGCCAAGTATTGGGCAAAATCCTATGG GCCATGAACATGTGG
Homology of Contig U35_30104 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |