barSeed - Barley Seed Development Database

Probe CUST_23898_PI390587928

Source Contig U35_30105

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23898_PI390587928	Hv_44K_v2	GCAATACTTGTTACTCCTCTTCGAGCATTGATCATCATATTTAGCGCAGTGCTAGCACAC	521	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26048.2	1170	2e-24	1063 - 1122	100	60 / 60	plus	None
MLOC	MLOC_26048.5	1917	2e-24	1763 - 1822	100	60 / 60	plus	None
JLOC1	JLOC1_17714.4	1921	8e-25	1763 - 1822	100	60 / 60	plus
Harvest21	ABC29825	676	3e-25	522 - 581	100	60 / 60	plus
Harvest35	U35_30105	676	3e-25	522 - 581	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_30105 676 Hv_44K_v2
CTGGCTCCTCTGGTGAAAACAATAGCTAGGGTTCCCTCACCGGCCGCCGCCGCCACAGGT
GTCACACACGCTGCCTGCCAGTGCCCTCCCCGGCCGCCGTCGTCCGTCTCACCGCCGCTC
CATTCTCACCGGTGCCCAGAGCCGCTCCATTCTAACCGGTCGGGACTCCCTCCGCTACCG
CCAGTGCCCTCCCCGGCTGACGCAACTAGTGCAAAGCCGCCGTCATCCCTCTGCACGACA
TGGCGACCCCACCGCTCCATTCTCGCCCCACCGCCGGTCGGGAGGGTAGGCCACCCCACC
GCTCCATTCTCGCCCACCGCCGGTCGGGCCTCTCTGCCTGTCTCCGGTCGCCACCAGCGC
CCGCCTTCCATTGGGTCTTCGTCGTAGCCACGTCACCGAGTGCTTTTATTGCATCTAGCT
TTGTGATCAAGAAGATTGGCCTGAAGAAAGCTGGGGACATTGTGGTAAGAGCAGTGATTT
TCGATGAGGTGGCCAACTTTGCAGCATATGCATTTGCTCCAGCAATACTTGTTACTCCTC
TTCGAGCATTGATCATCATATTTAGCGCAGTGCTAGCACACTTCATTTTGAATGAGAGGT
TGCATATGTTTGGCGTGGTTGGTTGTGCATTGTGTGTTGTTGGTTCATTGATATAGTGTT
GCATGCCCCAATGGAA

Homology of Contig U35_30105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None