barSeed - Barley Seed Development Database

Probe CUST_23897_PI390587928

Source Contig U35_30106

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23897_PI390587928	Hv_44K_v2	CGCCGTACAAGGCGCAGCCCTGATGCCATAATATGTATACCAGCAGTAGGTCGGGTGCAT	502	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	87.683	19.811	1.508	0.695	0.152	0.300
Raw	4623.943	1672.623	108.237	67.388	5.673	13.582

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360581	2714	2e-24	2238 - 2297	100	60 / 60	plus	ABC07074
MLOC	MLOC_69926.3	1595	2e-24	271 - 330	100	60 / 60	minus	None
MLOC	MLOC_69926.2	1366	2e-24	271 - 330	100	60 / 60	minus	None
MLOC	MLOC_69926.1	2270	2e-24	326 - 385	100	60 / 60	minus	ABC07074
JLOC1	JLOC1_46365.1	2259	8e-25	1883 - 1942	100	60 / 60	plus
Harvest21	ABC29826	619	3e-25	503 - 562	100	60 / 60	plus
Harvest35	U35_30106	619	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_30106 619 Hv_44K_v2
CTCGTGTCCGTCCAGGTCGGGCTGGCCGTGGCCGTCGGCATCTCGCTGTTCAAGATCCTG
CTGCAGGTGACCCGGCCCAACACCGTGGTCATGGGGCTGGTCCCCGGCACGCAGAGCTAC
CGCAGCATGGCGCAGTACCGCGAGGCCGTGCGCGTGCCGCCGTTCCTCGTCGTCGGCGTC
GAGTCGGCCATCTACTTCGCCAACTCCACCTACCTGGTGAAGAGGATCATGCGGTATCTC
CGCGAGGAGGAGGAGCGCGCCGCCAAGGTCAACCTCTGCGGCGTCCGCTGCATCGTGCTC
GACATGAGCGCCGTGACGGCGATCGACACGAGCGGGCTGGACGCGCTGGCGGAGATGAAG
CGGGTGCTGGACAAGCGGGGCATCGACCTGGTGCTGGCGAACCCGGTGGGGTCGGTGACG
GAGAGGATGTACAACTCGGTGGTGGGCGACACGTTCGGGTCGGGCCGCATCTTCTTCAGC
GTCGACGAGGCCGTCGCGGCGGCGCCGTACAAGGCGCAGCCCTGATGCCATAATATGTAT
ACCAGCAGTAGGTCGGGTGCATAGAAGAAGAAGAAGAAGAAGGATTAATCAGGATGCACA
GTGTTGGTGTGGTTGATTA

Homology of Contig U35_30106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05160.1	671	3e-89	protein\|sulfate transporter, putative, expressed
Brachypodium v1_2	Bradi1g51200.1	648	3e-85
Arabidopsis v10	AT3G15990.1	653	9e-53	\| Symbols: SULTR3;4 \| sulfate transporter 3;4 \| chr3:5427081-5430679 FORWARD LENGTH=653