barSeed - Barley Seed Development Database

Probe CUST_23891_PI390587928

Source Contig U35_30113

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23891_PI390587928	Hv_44K_v2	TTGTGATGGTTATTTTGCAACATCCCGTGCATTGCCTGTCCATCCTCTAAGCTGTATGGT	145	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19176.1	454	2e-24	224 - 283	100	60 / 60	plus	ABC12174
Harvest21	ABC29838	446	3e-25	146 - 205	100	60 / 60	plus
Harvest35	U35_30113	446	3e-25	146 - 205	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_30113 446 Hv_44K_v2
GCAAGGCGTACCTCTTCAACAGGGTTGTCAATGTTACATCTGGTATAAATGAGGATCGCA
TGATGATGACAGGGCTGCATACCGTTTCCGATATCTTCTGTGTTGGTTGCGGGTCCATTG
TTGGATGGAAATATGTAAGATCTTGTTGTGATGGTTATTTTGCAACATCCCGTGCATTGC
CTGTCCATCCTCTAAGCTGTATGGTGCTCCTGCTCTATGAGGCTGCACATGAGAAGAGCC
AGAGGTACAAGGAAGGGAAGTTTATTCTGGAGAGGTTTAAGGTGTCGGGCCCCGATGGTA
GCCACTACTGGGGGGTCACACATGATGCTCATCATGGGGGTGGAAGCGACACCGATGACT
TATGAAGCGCGACCTACGTGCGAAAACCTGCTGTTCATCTCTGTAAATAACCCTGGAGTC
GGGCCTTAGTTACTCCGGGGGGCTCG

Homology of Contig U35_30113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None