barSeed - Barley Seed Development Database

Probe CUST_2387_PI390587928

Source Contig U35_6383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2387_PI390587928	Hv_44K_v2	TAAAACACATACTTCATGGTTGCTGGAGACTGAGAAGAGGCTTCTCAGGATGGCTGCTAT	714	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369006	3091	2e-24	1672 - 1731	100	60 / 60	plus	ABC13362 ABC13363
MLOC	MLOC_74131.12	3388	2e-24	1369 - 1428	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.5	2722	2e-24	1431 - 1490	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.2	3300	2e-24	1438 - 1497	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.1	3333	2e-24	1438 - 1497	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.3	3417	2e-24	1438 - 1497	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.10	2973	2e-24	1382 - 1441	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.11	3293	2e-24	1369 - 1428	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.9	3022	2e-24	1405 - 1464	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.6	3250	2e-24	1418 - 1477	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.7	3217	2e-24	1418 - 1477	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.8	3326	2e-24	1418 - 1477	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.4	3313	2e-24	1438 - 1497	100	60 / 60	minus	ABC13362 ABC13363
MLOC	MLOC_74131.13	2911	2e-24	1335 - 1394	100	60 / 60	minus	ABC13362 ABC13363
JLOC1	JLOC1_49387.15	3237	8e-25	1766 - 1825	100	60 / 60	plus
JLOC1	JLOC1_49387.14	3255	8e-25	1784 - 1843	100	60 / 60	plus
JLOC1	JLOC1_49387.13	3213	8e-25	1742 - 1801	100	60 / 60	plus
JLOC1	JLOC1_49387.12	3099	8e-25	1750 - 1809	100	60 / 60	plus
JLOC1	JLOC1_49387.11	3042	8e-25	1571 - 1630	100	60 / 60	plus
JLOC1	JLOC1_49387.10	2988	8e-25	1517 - 1576	100	60 / 60	plus
JLOC1	JLOC1_49387.9	2993	8e-25	1522 - 1581	100	60 / 60	plus
JLOC1	JLOC1_49387.8	2960	8e-25	1489 - 1548	100	60 / 60	plus
JLOC1	JLOC1_49387.7	2965	8e-25	1494 - 1553	100	60 / 60	plus
JLOC1	JLOC1_49387.6	2858	8e-25	1509 - 1568	100	60 / 60	plus
JLOC1	JLOC1_49387.5	2978	8e-25	1507 - 1566	100	60 / 60	plus
JLOC1	JLOC1_49387.4	3009	8e-25	1538 - 1597	100	60 / 60	plus
JLOC1	JLOC1_49387.3	2996	8e-25	1525 - 1584	100	60 / 60	plus
JLOC1	JLOC1_49387.2	2985	8e-25	1514 - 1573	100	60 / 60	plus
JLOC1	JLOC1_49387.1	2682	8e-25	1211 - 1270	100	60 / 60	plus
Harvest21	ABC13300	779	3e-25	714 - 773	100	60 / 60	plus
Harvest35	U35_6383	780	3e-25	715 - 774	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_6383 780 Hv_44K_v2
CACAATCATCCTTGTTTCAGNAAAGAAGGTCAATTCTGCAGATCAATGCAATTATGTCCT
GAAGGGTTTGTCGCACACTGATGGACTAGAGCTTGATGATTCTGTTCGGGTTCACATGCT
TAAAGAGAGAAACAGCGAGAAAAAATATTTACGGTTGAGATGGAAGAGGATTGATAACTT
TCTTAGCTGCACAGGTGGCTCTGAAGACATTTTCTCGGAGCTTTTTGGTCATCAAAATGC
TGAAGATACATTTTGGCTGGATAGCTCGTCAGTTGATCAGAACAGGGCACGCTTTTCATT
TATGGGAGGTAAGGGCGGACCTCTGTGGAAGCAAATGACGTTTCACCTCTCCAGTCAAAG
AGCCAACTGTGGAGGAACCATTACTATTCGAGGTGCTCATGGATCTGCTGTGAAAAACTC
TCTTAAAGATGGCTTCTTGGAATTCCTTCACAAGGAGATCCAGTCCATTAAATACAATGA
AGAGGACTTTGAAGGGCTGCCATTTGACTTCCATGGTGGATTTGTTGGATATCTAGGGTA
TGGTCTTAAGGTCGAATGTGATGCATCATTTAACAAAGCTAAATCAAGTACTCCTGATGC
ATGCTTCTTCTTTGCTGATAACCTTGTGGCGATCGATCACAACAATGGTGATGTATATAT
TCTGTCGTTATATGACGAATATTCTTTGAGTAATGGAAATGGAATGCACCATAATAAAAC
ACATACTTCATGGTTGCTGGAGACTGAGAAGAGGCTTCTCAGGATGGCTGCTATGTCACC

Homology of Contig U35_6383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48620.1	896	2e-121	protein\|4-amino-4-deoxychorismate synthase, putative, expressed
Brachypodium v1_2	Bradi1g34070.1	905	3e-139
Arabidopsis v10	AT2G28880.1	919	2e-65	\| Symbols: emb1997, ADCS \| para-aminobenzoate (PABA) synthase family protein \| chr2:12398937-12403108 REVERSE LENGTH=919