barSeed - Barley Seed Development Database

Probe CUST_23878_PI390587928

Source Contig U35_30127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23878_PI390587928	Hv_44K_v2	TGTTGATCATAAAGAACCTCCGAAGCCACATGGAGGCGACACACTCAGAGATGATATCTT	472	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4537.1	3839	2e-24	1014 - 1073	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.2	3848	2e-24	1009 - 1068	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.3	3864	2e-24	1009 - 1068	100	60 / 60	minus	ABC24293
MLOC	MLOC_4537.4	4002	2e-24	1009 - 1068	100	60 / 60	minus	ABC24293
JLOC1	JLOC1_2837.2	3896	8e-25	2814 - 2873	100	60 / 60	plus
JLOC1	JLOC1_2837.1	3869	8e-25	2787 - 2846	100	60 / 60	plus
Harvest21	ABC29859	535	3e-25	473 - 532	100	60 / 60	plus
Harvest35	U35_30127	535	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_30127 535 Hv_44K_v2
GTCAGATTCAGAAGGAACTGCTTGCTATCAAAAGGAAGGCTCTTGCATTTAGGCGTGAAG
GGAAGAATACAGAAGCTGAAGAGGAACTAGAGAAGGCGAAGGTCTTGGAGGAGCAACTTG
CAGAGATAGAAGAATTGGCTAACTCAAGTGCTTCTCAAAAAGGTTCAGGTCCTGGTGAAC
ATGAGACTATGGAAAATAAATATGATATTCAGCATGTCCCTAATGTTCATGCTACTGCAT
CTTCAATAAAACATGCATTGAAGGAGGATGTTTTGTTGCCAGTGAATGCATCTGAACTTA
GTGCGTCAATAGATACTGTAGCTAGTTCTGGAAGCAAACCACAAACTGAAACAGTCATTT
CCCAACCTACTCACAATTCAAAGGTAACTAGTGATGGAGCATACTCGGCCTTCTCCAGGT
TACCTGCTGCTGATCAGTTGCAAACTGCAGAAGCATTGCATTCACCTTCAGATGTTGATC
ATAAAGAACCTCCGAAGCCACATGGAGGCGACACACTCAGAGATGATATCTTACT

Homology of Contig U35_30127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None