barSeed - Barley Seed Development Database

Probe CUST_23877_PI390587928

Source Contig U35_30128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23877_PI390587928	Hv_44K_v2	TCATGGCTTGTAACCTGCAAGTTCAGATTTTGTTAAGTTCACCTCCTTGGTACTTGTAAA	277	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.062	1.317	1.080	1.014	0.282	0.557
Raw	32.250	62.706	44.410	62.908	5.681	13.844

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70233.1	850	2e-23	9 - 66	100	58 / 58	minus	ABC29860
MLOC	MLOC_70236.1	1039	2e-23	9 - 66	100	58 / 58	minus	ABC29860
MLOC	MLOC_70236.2	1250	2e-23	9 - 66	100	58 / 58	minus	ABC29860
JLOC1	JLOC1_46604.1	934	6e-21	1 - 53	100	53 / 53	minus
Harvest21	ABC29860	348	3e-25	278 - 337	100	60 / 60	plus	ABC29860
Harvest35	U35_30128	348	3e-25	278 - 337	100	60 / 60	plus

Contig Sequence (348 bp)

>U35_30128 348 Hv_44K_v2
GTTCATATGATCTTTGCGCAAAGAAATCCAAGAGCGCTCGGGAGGCAGTTGCGTACCTGA
ACAGAAAATCTGACGGAGAGTCAACGAGATTTGGAGAAGTCTTTCTGAAATGTCTAGAAA
TAGCTGGTTAGCGTCATAAGGTACCATGGTGAGTTTTCTGTTCTTACTGCTGTAAAATTT
CTGAGAAATACATGCAGTCTATAGAGTCCACTCAACTTCGAGTTGAAGATGAATTAGCTT
AGCTAGAGATATACTGAGGAACTAAGCCTGGCTCAATTCATGGCTTGTAACCTGCAAGTT
CAGATTTTGTTAAGTTCACCTCCTTGGTACTTGTAAAAAAAAAAAAAA

Homology of Contig U35_30128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None