barSeed - Barley Seed Development Database

Probe CUST_2386_PI390587928

Source Contig U35_6384

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2386_PI390587928	Hv_44K_v2	TGGCATTTACTTCGAAAAGCGTGAGTTCTATTTGGGATAGATAATCATACCACTATAGGT	1340	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.601	0.685	1.296	2.219	1.201	1.168
Raw	139.256	253.685	422.360	1092.984	214.622	226.819

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78519.1	1709	2e-24	1406 - 1465	100	60 / 60	plus	ABC13928
JLOC1	JLOC1_52331.1	1546	8e-25	101 - 160	100	60 / 60	minus
Harvest21	ABC13928	1445	3e-25	1341 - 1400	100	60 / 60	plus	ABC13928
Harvest35	U35_6384	1445	3e-25	1341 - 1400	100	60 / 60	plus

Contig Sequence (1445 bp)

>U35_6384 1445 Hv_44K_v2
GATCGCCGCCGCCGGAACCCTAAAACCGGCCCGCCATGGCTGATCCGCCATCCCTAGCCC
CCACCGCGTCACAGCACCACGACCAACTCGCCGCCTTTGTTTCCATTCCGCAGAACGCCA
ACCCCCAAATCCCCCTGCTCCCCACCGTTTCCTCCGCACAGGTCGACCCGGCCTCGGCTG
CTACGGGAGGCAGATCCATGGACCTCCCGCCGCAGTTGCAGGCGCCTTCTCGCACGCAGG
CGGCTGAAGGAGCCGGAGCATTCGGCGCGATCCACCACTCAGACCCGGCCTCCCTCGCCC
CCGCCGTCGGCCAGCCTCCACGGTACGCGACAGCCGGCATGACATATGGCGCGCAGATGA
CCTTCCCTGGCGGCGGGGGTCAGTTGGGCCAGCAGCCGGCGCTGCGCGCGGCCATGTTTG
GACAGGGGCAGCCGAGGATGCTGCAAGGGCAGGGCAACGCAGCCTCCGCGGCGCAGTACG
GGATCCAGTTCCAGCCAACGATGATGGCGCAGCCAGGGCAGAGGGGCGTGGTACAAGGCG
TGCAATTCAACACCCCCACTGCACAAGCACAATCCATGGGCGCTTCCCTGATGAACCAGA
TGAGGCCTAATGGAATTACTACCCCATATGGTGCTCAAACTCAGCAACGTTCTGCCTATC
ATGCACAAATGAGGCCACAACAGCTACCTGGATCGTCACAAAATGGGCCTGTGGTGCAAA
TGTTACCAACGCATCAGATGCAATCGTCAATGGCCTCACCTGTTTCTCCACAGCAACGTC
AGCAAGAACATATGATGCAACTGATACAACAGCTTCAGCAGAGAGGGTTGAATCGCCACC
AGATTGCGCAGGCGCTACAACGACTTCCCCATCTTAATGCCCAGCATCTGAACCAACAAC
AACAACAACAACAACAACAAGCATCTCCAAAGATGCCAGCATCTGCGGCATGGAAACCTG
CAAACATGGCAGGATCGCAGCCGGTGATACCTTCCACAATCAGAACCGTGGCAGGTGCAA
ATGCCCTGCATCGAGGAGGGGGAAATTGCAGCCAACTTCTTGGGAAGAGAAAGATACATG
ATTTGGTGGCGCAGGTTGATCCACTCTGCGAGGTTGATCCAGAGGTGGAGGATTTGATTC
TAGAGATCGCCGACGATTTCATTAGCACGGCGGCTGATTTTGCGTGCAGGCTTGCGAAGC
ACAGGAAATCATCGGTTGTGGAAGCCAAGGATGTGCTGCTGCACCTGCAGAGGAATTGTC
ACCTGTCCGTTCCTGGTTTCTCACAGGAGAGGATGTGAATGAATCTGCAGAGAAATTCAG
TATAGACTTTGGTAGAATTGTGGCATTTACTTCGAAAAGCGTGAGTTCTATTTGGGATAG
ATAATCATACCACTATAGGTAAATTTCAGAATAAAGATAGATTGATATAAAAAAAAAAAA
AAAAA

Homology of Contig U35_6384 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62820.3	543	3e-109	protein\|Transcription initiation factor TFIID subunit A containing protein, expressed
Brachypodium v1_2	Bradi3g07270.1	436	4e-128
Arabidopsis v10	None