barSeed - Barley Seed Development Database

Probe CUST_23862_PI390587928

Source Contig U35_30135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23862_PI390587928	Hv_44K_v2	CTGTTCTACCTTGTACTTACTCTATCTACCATCTACTACTAGTAACAAATTAGCTGCTAA	320	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.694	3.406	1.111	0.789	0.303	0.434
Raw	506.779	610.285	167.022	203.391	25.398	40.537

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55747.1	1487	6e-24	71 - 129	100	59 / 59	minus	ABC14545 ABC29872
MLOC	MLOC_55747.2	1499	6e-24	70 - 128	100	59 / 59	minus	ABC14545 ABC29872
MLOC	MLOC_55747.3	1489	3e-22	1381 - 1439	98	58 / 59	plus	ABC14545 ABC29872
JLOC1	JLOC1_35993.1	605	3e-24	51 - 109	100	59 / 59	minus
JLOC1	JLOC1_35994.3	1757	3e-24	1360 - 1418	100	59 / 59	plus
JLOC1	JLOC1_35994.2	1772	3e-24	1375 - 1433	100	59 / 59	plus
JLOC1	JLOC1_35994.1	1769	3e-24	1372 - 1430	100	59 / 59	plus
Harvest21	ABC29872	395	3e-25	321 - 380	100	60 / 60	plus	ABC29872
Harvest21	ABC14545	1467	5e-23	1366 - 1424	98	58 / 59	plus	ABC14545
Harvest35	U35_30135	395	3e-25	321 - 380	100	60 / 60	plus
Harvest35	U35_7079	1467	5e-23	1366 - 1424	98	58 / 59	plus

Contig Sequence (395 bp)

>U35_30135 395 Hv_44K_v2
CCCTAATGGAGTGTACGGAGTGGGGGGTGATCGTGTGCAAGAACTCACAGTGGTCAAGCG
CAGGAAGACTCGCAGGTAGATTTGATGGCACCTGTAGGATGCACCAGCAAGGAAAGAGGT
TGCCATATCCCCTTGGTGGTTAAAGTAGTACTCCGTAGTAAAAACTGTTATGAGCGTGTG
CTTTGAATAATTAATTAATCTGACTGTACCAATTAGAGAGGGGGGACGGGGGGACTATGA
GAGCAAGCCCTTCTCACGTTGTTGGACCAATTTCGATGTTGTCGGATCAAGCTGTAGCTT
ATGACTATCTGCAGTTTGTACTGTTCTACCTTGTACTTACTCTATCTACCATCTACTACT
AGTAACAAATTAGCTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_30135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None