barSeed - Barley Seed Development Database

Probe CUST_23846_PI390587928

Source Contig U35_30144

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23846_PI390587928	Hv_44K_v2	AACCGTGACGCCGGAGACTCTGGTGTTCAAGCAGCAGAGGGGGAAGATGAGCTATAGAGT	410	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	18.144	5.956	1.334	0.682	0.351	0.630
Raw	1455.894	763.585	153.523	129.861	22.218	42.904

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63510.1	2817	2e-24	2196 - 2255	100	60 / 60	plus	ABC09571
MLOC	MLOC_63510.2	2122	2e-24	1501 - 1560	100	60 / 60	plus	ABC09571
JLOC1	JLOC1_41605.1	1781	8e-25	216 - 275	100	60 / 60	minus
JLOC1	JLOC1_41606.1	2497	8e-25	2084 - 2143	100	60 / 60	plus
Harvest21	ABC29894	470	3e-25	411 - 470	100	60 / 60	plus
Harvest21	ABC09571	1370	3e-25	1047 - 1106	100	60 / 60	plus	ABC09571
Harvest35	U35_30144	470	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_18284	1370	3e-25	1047 - 1106	100	60 / 60	plus

Contig Sequence (470 bp)

>U35_30144 470 Hv_44K_v2
CGTCGCAGGCGTCGCGGCTCTGCTCAAGAAGAAACACCCCGACTGGACGCCGGCCATGAT
AAGGTCGGCGTTGATGACCACGGCTAAGACCGTCGACAACACCGGGGCCCCCATTGTCGA
CGACGGAGCCGACGACGCCAGCGCCGCGACGCCGCTCGTGGCAGGGGCCGGGATGGTCCT
TCCGCAGAGCGCGATGCATCCGGGCCTGGTGTACGACGCCGGCACGCAGGAGTACGTCGA
CTTTCTCTGCACCTGCACGGCGGCGTGAGCAACCTCAACTACCCTTCTCTGGTGGTGCTC
TTCGGCAGCCGCACACGCATCCGCACGCTGACGCGGACGGTGACCAAGGTGTCCGAGCAG
CCATCCGAGACATACAAGGTGTCTGTCACGGCGCCGGAGGGCGTCAAGGTAACCGTGACG
CCGGAGACTCTGGTGTTCAAGCAGCAGAGGGGGAAGATGAGCTATAGAGT

Homology of Contig U35_30144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None