barSeed - Barley Seed Development Database

Probe CUST_2383_PI390587928

Source Contig U35_6387

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2383_PI390587928	Hv_44K_v2	TTGTAAAACCATTCATTTTACTAGTCTGCGCGAAATCTAGAGAGTGTACAGTTTTGTAGT	823	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.099	0.262	0.935	1.920	1.188	1.619
Raw	53.822	230.894	697.706	2250.324	489.832	717.091

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371513	1840	2e-24	1727 - 1786	100	60 / 60	plus	ABC14290
MLOC	MLOC_59055.2	4324	2e-24	2965 - 3024	100	60 / 60	minus	ABC14290 ABC26011 ABC33107
MLOC	MLOC_59055.6	1459	2e-24	75 - 134	100	60 / 60	minus	ABC14290 ABC33107
MLOC	MLOC_59055.7	1457	2e-24	75 - 134	100	60 / 60	minus	ABC14290 ABC33107
MLOC	MLOC_59055.5	2175	2e-24	816 - 875	100	60 / 60	minus	ABC14290 ABC33107
JLOC1	JLOC1_38404.1	4296	8e-25	1302 - 1361	100	60 / 60	plus
Harvest21	ABC14290	941	3e-25	59 - 118	100	60 / 60	minus	ABC14290
Harvest35	U35_6387	1319	3e-25	824 - 883	100	60 / 60	plus

Contig Sequence (1319 bp)

>U35_6387 1319 Hv_44K_v2
GTGGAGGACCCGTGTTTGTGTGCAGACTGCGTACGGTGTAGAAGTCGAGGTTGAAAGATA
TCCGTATGATCCCAGCTTAATGGTCTTCATGGACTACAGAGATTGTTTCAAAGAGAAGTT
CTCACACCCTGAGGAAGCCAATCCAACATTTCTTTATGCCATGGCCATGTCATCCACACG
AGTTTTCTTTGAGGAAACATGCTTAGCTTCAAAAGATGCAATGCCCTTTGATCTCCTTAA
GAAGAGGTTGATGTCTCGGTTGGATGCGATGGGAGTCCGTATCCTAAAAGTATACGAGGA
GGAGTGGTCTTATATTCCTGTTGGAGGATCCTTACCTAACACAGACCAGAAAAATCTTGC
ATTTGGTGCTGCAGCGAGTATGGTCCACCCTGCAACTGGATACTCGGTGGTCAGATCTTT
GTCTGAAGCTCCAAGATATGCTTCTGTGATATCTGATATCTTAGGAAATCGTGTCTATTC
TGGACAATATTTGCCTGGAAGTTCTGAAATGTCCAGTCCATCAATGCTTGCATGGGGAAC
ACTATGGCCTCAAGAACGGAAACGTCAACGCTCATTCTTCCTCTTTGGATTGGCCTTGAT
AATTCAACTGGATAACGAAGGCATCCAAACGTTCTTCGAAACCTTTTTCCGGTTACCCAA
ATGGATGTGGCGAGGATTCCTTGGTTCGACGCTGTCGTCAGTGGATCTCATGCTGTTTGC
ACTCTACATGTTTGCAATTGCGCCAAACAATTTGCGAATGAACCTCGTCAGACACCTCCT
CTCGGACCCCACTGGTTCAGCAATGATCAGGACCTACCTGACCTTGTAAAACCATTCATT
TTACTAGTCTGCGCGAAATCTAGAGAGTGTACAGTTTTGTAGTTGTACATAACATAGTTA
GAGATGTTGGCCTGCCATGTGTTGCCTGCCTATGCCTAGTAGTGGAGTAAAGTGTGGATC
TTGAGCGGCCGCTAAGGAGATTAAGCTAAGATGGAGGAGGATTGTTCGCTGGATCGTCAG
GAAGGTTCACCCGGCATCATGAAGTTAAGATGGGAGGCGTTTCACTTACATTTAAACATA
CAGAATGCCTCGAGGGCGAGGTTCGTCTGTGTCAACCCAAGAGAAGCCTAATGCTGATGC
AGCAGTCGATTCTGACAAATATAACAGCAGGCATAAGAGGAGCGCTTATTTGTTGCTGGG
GTTGTTTATACTTTTCCTTCATGGATCCTGGTCTGTTTACCGTATGCAGTTTGCAAATCT
TCCTTTGCCCCTTAATGCTGAGCANGCTGGTAAGCGGGGGTTCTCAGAGGCTTCTGCCC

Homology of Contig U35_6387 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39960.1	541	4e-175	protein\|lycopene epsilon cyclase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g41890.1	545	1e-179
Arabidopsis v10	AT5G57030.1	524	5e-132	\| Symbols: LUT2 \| Lycopene beta/epsilon cyclase protein \| chr5:23077398-23079818 FORWARD LENGTH=524