barSeed - Barley Seed Development Database

Probe CUST_23839_PI390587928

Source Contig U35_42121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23839_PI390587928	Hv_44K_v2	TTGATTCATATATTGCAGATGAGAGAGTGGGATTAGCTGAACCTGCAGATGGACTGGAGC	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54480.2	2381	2e-24	1924 - 1983	100	60 / 60	plus	None
MLOC	MLOC_54480.1	3228	2e-24	1840 - 1899	100	60 / 60	plus	None
JLOC1	JLOC1_35065.1	3228	8e-25	1840 - 1899	100	60 / 60	plus
Harvest21	ABC37543	589	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_42121	589	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_42121 589 Hv_44K_v2
GCAAAAGAAGACCGTATCTGAATCAGATGTGCCGGCTTTACAGGGTAAATCTGAGTCCAA
GTCAGAATCACCCAAACAGAAGCCAGAATCACCCAAACAGAAGATTGGTTCAGAGTTTGT
TCCTGATGTGCCACACAATGGAGAGTTAATCAAATCCCCCCCTGGGAAAGTTGAATCTAA
AGAACCTGCTGCTCCTAGTGCTAATACCTTGAATCCTGTTTCGACTATGGACCATAAGAA
TACTGCTGTTCCTATGATTCGCGAGAGTATATGGGAGGGTGCGATTCAGCTGACTCTATC
GTCACTCACGAATGTTGTTGCCATTTTCAAAAGTGGTGAAAAGCCATCTGGGAAAGAATG
GAGTAGCTTAATTGAAATCAAGGGGAGAGTTAAACTTAGTGCTTTTCAGGAATTTGTCGA
ACAGCTTCCCAAATCTAGGAGCCGCGCTATAATGGTAACTGAGCTGTGCTGGAAGGAGGG
TTCTCCGGAGAGTGGCCGCCAACATTTTTCGCAGACAATTGATTCATATATTGCAGATGA
GAGAGTGGGATTAGCTGAACCTGCAGATGGACTGGAGCTGTACCTGTGC

Homology of Contig U35_42121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g11780.1	1120	3e-70	protein\|transcription factor S-II, central domain containing protein, expressed
Brachypodium v1_2	Bradi3g07877.1	1094	2e-81
Arabidopsis v10	None