barSeed - Barley Seed Development Database

Probe CUST_23837_PI390587928

Source Contig U35_42123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23837_PI390587928	Hv_44K_v2	TTCTTATAACTTGCAATGATCATCGACATCTCTTCCAACCCCAAGGAGATAAATATGCTG	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5049.1	5990	2e-24	4710 - 4769	100	60 / 60	minus	ABC20233
JLOC1	JLOC1_3216.1	5868	8e-25	1230 - 1289	100	60 / 60	plus
Harvest21	ABC37546	702	3e-25	640 - 699	100	60 / 60	plus
Harvest35	U35_42123	702	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_42123 702 Hv_44K_v2
GGCAGATTGCAGAAGCGAGCAACCTTCCTGATGAGCAGCAAATGGAACTTGATGGTCATG
GTCCTGATGAGCAAGTGGAAGAGGTCCAGCAGGATGGACAGATGGATGATGCCCCAAATA
TAGTGTTGTCTGAGGACGCTCTGAACGAGAGAGTCGGGAAATCTCTAGTGTCAGATGAAA
AACGAGGAGTTGTAGATGTTAAAGAAGGAAGGAGGTGTGGGCTATGTGGAGGAGGGACTG
ATGGGAGGCCACCCAAGATTGCACTGCATGATACTGCTGACAGCGAGAATGAAGCCTATG
AGGGTGCTATGCCTTCAGAGGAGCCCAACTATGATATATGGGATGGGTTCAGTGACGATC
CTGGATGGCTTGGAAGGTTACTGGGTCCAATACATGATAGATTTGGGATTGCCCGTGTCT
GGGTTCATCAGAATTGTGCAGTTTGGAGTCCCGAGGTTTACTTTGCTGGTTTAGGGTGCC
TAAAAAATGTAAGGGCAGCACTTTGCCGTGGAAGGCTTTTGAAGTGCAGTCGATGTGGTA
GACCTGGAGCAACTATTGGGTGCCGTGTTGATCGATGTCCAAAAACCTACCATTTGCCTT
GTAGTCGAACAGAAGCCTGCATATTTGATCACCGGAAGTTTCTTATAACTTGCAATGATC
ATCGACATCTCTTCCAACCCCAAGGAGATAAATATGCTGAAC

Homology of Contig U35_42123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g46130.1	1823	6e-134
Arabidopsis v10	AT3G15120.1	1954	4e-72	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:5088487-5095482 REVERSE LENGTH=1954