barSeed - Barley Seed Development Database

Probe CUST_2382_PI390587928

Source Contig U35_6388

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2382_PI390587928	Hv_44K_v2	GGTATACTTTTGCTAACATTGTTGCTGAATTAGTCAATAATATCATTTCGCCCTTGTCTC	697	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.499	1.906	1.190	0.686	0.253	0.409
Raw	587.437	1175.831	630.903	579.092	74.258	133.013

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362909	2442	3e-21	2389 - 2442	100	54 / 54	plus	ABC14887
JLOC1	JLOC1_48841.4	1980	8e-25	1693 - 1752	100	60 / 60	plus
JLOC1	JLOC1_48841.3	2379	8e-25	2092 - 2151	100	60 / 60	plus
JLOC1	JLOC1_48841.2	2378	8e-25	2091 - 2150	100	60 / 60	plus
JLOC1	JLOC1_48841.1	2372	8e-25	2085 - 2144	100	60 / 60	plus
Harvest21	ABC14887	776	3e-25	20 - 79	100	60 / 60	minus	ABC14887
Harvest35	U35_6388	776	3e-25	698 - 757	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_6388 776 Hv_44K_v2
TGCTGATGGCACCAAGGTTGCATCCCTGATGGGCAAGTGGGATGAGAGCATGTATTGCGT
TGTTAGTGATGATGCTTCTAAACTGAACTCTCACATCTCACGTCAGAGCCCTGGCGCCAC
CTTGTTGTGGAAGAAAAATGAGCCTCCAGCAGATCCCACTCGATATAACTTGTCATCATT
TGCGATTACTTTAAATGAGCTAACTCCAGGGCTTAAGGTGAAGCTTCCACCAACAGATTC
AAGACTGAGACCAGACCAGCGACATCTAGAGAATGGGGAGTACGAAAAGGCCAACTCTGA
GAAACTGCGCCTCGAGACCAGACAACGAATGGCAAGGAACATGCAGGAGAGTGGCTGGAA
GCCAAGATGGTTCCAAAGGGACACTGAGCATGGAACATACCGCTATGTCGGAGGCTACTG
GGAGGCAAGGGAGCAGACGAAATGGGTTGGATGCAGTGACATATTTGGCAGTTTCTGCGA
CAATCCAAATCCACGGGTGTCCACGCTGTACACCAGCGCGAGTGTCTAAGGAGCAGTAGT
AGGCGTTGACAGCATATTAAATTTTCAAGGTACATAGTCGATTGGTTCCTCTCACATCTG
TCGTACAAAGAAGAGCTAAGATGTTCTCCTTGTCGTCCTGTATACATACACAGACGCTGG
GACATTGGGCGCAACCAAAACCCTAATTTGATATACTGGTATACTTTTGCTAACATTGTT
GCTGAATTAGTCAATAATATCATTTCGCCCTTGTCTCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6388 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40590.1	743	1e-91	protein\|oxysterol-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g33020.1	716	2e-98
Arabidopsis v10	AT4G22540.1	721	3e-64	\| Symbols: ORP2A \| OSBP(oxysterol binding protein)-related protein 2A \| chr4:11860969-11866108 REVERSE LENGTH=721