- Probe CUST_23826_PI390587928
- Source Contig U35_30154
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_23826_PI390587928 | Hv_44K_v2 | TGCTGCACTGCAAACGACATCCATTAAACTAGCCGTTTAAATGATCTCTTGCCTGTTAAA | 358 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 6.368 | 5.829 | 1.471 | 0.856 | 0.665 | 0.645 |
Raw | 66.107 | 89.934 | 20.266 | 17.852 | 3.153 | 4.812 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK376059 | 1691 | 7e-23 | 1633 - 1689 | 100 | 57 / 57 | plus | ABC29910 |
MLOC | MLOC_77584.2 | 710 | 7e-23 | 392 - 448 | 100 | 57 / 57 | plus | ABC29910 |
JLOC1 | JLOC1_51741.2 | 1463 | 4e-23 | 358 - 414 | 100 | 57 / 57 | plus | |
JLOC1 | JLOC1_51741.1 | 1629 | 4e-23 | 524 - 580 | 100 | 57 / 57 | plus | |
Harvest21 | ABC29910 | 429 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | ABC29910 |
Harvest35 | U35_30154 | 429 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus |
Contig Sequence (429 bp)
>U35_30154 429 Hv_44K_v2 GCAGGAACTGACTTTGTAGGAGCAAGGCAGGGCTGGTGCAACAACATGAAGGGGCAGTAG AAGTAGCAAACCTATGGTGAAGAACTGAAGGCTGGAGAGTCTGATTTTGTCGAAGAATGA AACCGCAGCTGATCGTCTGGCAGAACATTGTCATGATCCGTGTGTTATGAGATCGTTTAG TACTACCTAACTACCTGGAACTTTAAAATAGATTAACGCAAGCAGCTCTTTTGCCCGTCG TATTTTAGGTTTCAGTGTTCTTCTAGACTCTCCAGCAGCAATTCAGCGGTACCTAGATTG CTTTGAACTGTAAAGCTTGATGTCTGATGCCGGCAACTTTTGCATCGTTGCACTGTCGTG CTGCACTGCAAACGACATCCATTAAACTAGCCGTTTAAATGATCTCTTGCCTGTTAAAAA AAAAAAAAA
Homology of Contig U35_30154 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |