barSeed - Barley Seed Development Database

Probe CUST_23823_PI390587928

Source Contig U35_30157

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23823_PI390587928	Hv_44K_v2	GATACAAAGATGAAGATACTTGCTGGGGCAGCTCAAGGCCTGAAGCATTTGCATGTTAAC	449	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373922	2138	7e-23	1430 - 1489	98	59 / 60	plus	ABC08444
MLOC	AK355302	2259	7e-23	1545 - 1604	98	59 / 60	plus	ABC08444
MLOC	AK372682	1601	3e-22	901 - 959	98	58 / 59	plus	ABC08444
MLOC	MLOC_10963.4	978	3e-22	243 - 301	98	58 / 59	plus	ABC08444
MLOC	MLOC_10963.1	1417	3e-22	456 - 514	98	58 / 59	plus	ABC08444
MLOC	MLOC_10963.2	1416	3e-22	455 - 513	98	58 / 59	plus	ABC08444
MLOC	MLOC_10963.3	1415	3e-22	454 - 512	98	58 / 59	plus	ABC08444
MLOC	MLOC_6917.1	1055	3e-22	640 - 698	98	58 / 59	minus	ABC08444
JLOC1	JLOC1_7216.1	1403	1e-22	454 - 512	98	58 / 59	plus
JLOC1	JLOC1_4548.1	1204	1e-22	347 - 405	98	58 / 59	plus
Harvest21	ABC08446	595	5e-23	343 - 401	98	58 / 59	plus
Harvest21	ABC08445	515	5e-23	338 - 396	98	58 / 59	plus
Harvest21	ABC08444	1261	5e-23	543 - 601	98	58 / 59	plus	ABC08444
Harvest35	U35_30157	539	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_3361	597	5e-23	344 - 402	98	58 / 59	plus
Harvest35	U35_3360	1263	5e-23	546 - 604	98	58 / 59	plus

Contig Sequence (539 bp)

>U35_30157 539 Hv_44K_v2
GCCGTGTTGCGTGTGGGATGCAGCAAGATGGTGGTTCCTGTGATCCTCTTCCGTGTCATG
GGCAGTGAAGCCGGCGGGCTCCCCTTGGTCGCCATGAGCAGGGATAACCAAGGCTTGATA
TATCATTCACCTACGAGGAGCTGAATGCGGCGACGTGGGGCTTCCCACGAGATCACCTCC
TTGGAGAAGGCCTCTTAAGAAAGGTTTATAAAGGTTTGCTGAACAGAAATGCGGTTGCAA
TAAGGATCCTCAACCCGGGATGGCAAGGGAGCAGAGAGTTCTGCACAGAAGTTATGGTGT
TGAGCAAGATGAATCACCCGAATCTTGTCAAGCTTGTTGGCTTCTGCGCTGATGATGATC
GTAGGCTTTTAGTGTATGAATTCATGCCTCTGGGTTCCCTGGAAACTCACATTTTCGATC
TTCCCCCTGATAAGAAGCCTCTTGACTGGGATACAAAGATGAAGATACTTGCTGGGGCAG
CTCAAGGCCTGAAGCATTTGCATGTTAACTGCAACCCTCCTGTCATAAACTGTGGAGTG

Homology of Contig U35_30157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g65930.1	356	8e-53
Arabidopsis v10	None