barSeed - Barley Seed Development Database

Probe CUST_23821_PI390587928

Source Contig U35_30159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23821_PI390587928	Hv_44K_v2	ATGTTGCCCCGAAATGCATTCTGTCTGTCAACACGGCCAAGGCGACCCTTTCCGCAATGC	291	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.036	1.729	2.164	1.668	0.382	0.348
Raw	51.589	138.368	147.530	178.222	14.518	14.155

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358870	1509	2e-24	812 - 871	100	60 / 60	plus	None
MLOC	MLOC_16021.1	1162	2e-24	376 - 435	100	60 / 60	plus	None
JLOC1	JLOC1_11022.1	1050	8e-25	370 - 429	100	60 / 60	plus
Harvest21	ABC29919	511	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_30159	511	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_30159 511 Hv_44K_v2
CGGAACTCAACCTCCTCGTCTGCAACCCTCTGCAGAAGACGTTCGAGCGGCTGCGACCCG
TCCCCACCAGCGGCCACATCGTGTCGTGCTGCACAGTCGTCCCGGGGGAAGGGGCCGAGT
TCCGCGTCCTCGTCCTGCTCTTCGGCCAGACCTCCCCCAGCTTCTATGTTCTCATATACT
CCTCTGCTTCCTCTGCTTGGGAGGTCGCCACCGGCGCGCTGAAGCGGCCCCTGAAGCCAC
AGCACGGCCCGTCCGCCGTCGTCGGGGACGTCGTGTACAGGCTGCAGTCGGATGTTGCCC
CGAAATGCATTCTGTCTGTCAACACGGCCAAGGCGACCCTTTCCGCAATGCCGCTGCCCA
ACGCCGAGATGCCCCTCTACGCCGGCAACAACTGGATCGGCAAGACGGAGGACGGCCGCC
TCTGCTTCTTCGCGATCCGGGAGCCTCTGCTTCTGGTGACATGGGTGCTGGAATCGCCTC
GGAAGTGGACGCAGCAGGAGCCGTTGGCACT

Homology of Contig U35_30159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51760.1	444	2e-61	protein\|OsFBX109 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g10017.1	501	1e-77
Arabidopsis v10	None