barSeed - Barley Seed Development Database

Probe CUST_2381_PI390587928

Source Contig U35_6389

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2381_PI390587928	Hv_44K_v2	CAGGTAAAAAGTATAAAGTTTTGTAGGCAGATTCTCTTGTTATGGTACCAGCAAAGAATG	692	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.244	3.408	1.090	0.615	0.486	0.435
Raw	136.885	100.941	28.475	25.698	5.697	6.590

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5838.1	1844	2e-24	1778 - 1837	100	60 / 60	plus	ABC14280
JLOC1	JLOC1_3780.1	1887	8e-25	1729 - 1788	100	60 / 60	plus
Harvest21	ABC14280	1441	3e-25	1323 - 1382	100	60 / 60	plus	ABC14280
Harvest35	U35_6389	811	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (811 bp)

>U35_6389 811 Hv_44K_v2
CGACATTTCAAAATGGGAGGCCATTTCCTGGCTTGCAATTTTGACAATTTGGATCTCAGT
ACTCTCTGACTACTTAGTTAATGCAATCGACGGGGCTTCCCAGGCTTGGAATATACCGGT
TGCATTCATCAGTGTTATTTTGCTTCCGATTGTGGGGAATGCTGCTGAACATGCTAGTGC
TGTCATGTTTGCAATGAAAGACAAATTAGATCTTTCCCTTGGTGTCGCAATAGGGTCATC
AACACAGATGTCCATGTTTGGGATACCATTTTGTGTAGTGATAGGGTGGATGATGGGCCA
GCCGATGGACTTGAACTTTCATCTCTTCGAGACTGCAAGCCTCTTAATGACAGTGCTGGT
TGTCGCGTTTTTATTGCAGGATGGGACTTCAAATTGCTTAAAAGGGTTGATGTTGTTTCT
ATGCTATCTGATAGTTGCTGCTAGTTTCTATGTACATTCCGATCAGGATCCTGATGGTAA
TAACCCTGCGCAAAACTAGCAGTACCTGGATGATCCCATGGATTCTACAGAAGATTTCTA
CCATGTGACAACATTTGCAGTCAGGACAGAGACTATTTGTGTATTTTTGACTAATTTCGC
AGTGTTTCCTCACATTTAGAGGTCTTTCAAGTGCATCCATTCTTGAAACTCTTTTCAGAA
AGCCGCGCATCCAGTTTTGTAGATAGGCAATACAGGTAAAAAGTATAAAGTTTTGTAGGC
AGATTCTCTTGTTATGGTACCAGCAAAGAATGAAAGTTGAAACAATATTTTAGTTTTGGT
ATTTTTTACCAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6389 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55940.2	418	2e-80	protein\|sodium/calcium exchanger protein, putative, expressed
Brachypodium v1_2	Bradi3g03544.1	460	3e-105
Arabidopsis v10	AT3G13320.1	441	5e-81	\| Symbols: CAX2, atcax2 \| cation exchanger 2 \| chr3:4315418-4317997 FORWARD LENGTH=441