barSeed - Barley Seed Development Database

Probe CUST_23818_PI390587928

Source Contig U35_42132

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23818_PI390587928	Hv_44K_v2	ATTTCCTGGACAATTTGCAGGGCAGGTGTTTGATTCATTGCACCAACACAGACAGTCCAT	379	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.023	0.927	2.154	1.589	0.717	0.872
Raw	12.012	16.900	35.726	36.928	5.860	8.801

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67838.1	2594	2e-24	22 - 81	100	60 / 60	minus	None
JLOC1	JLOC1_44828.1	4945	8e-25	2458 - 2517	100	60 / 60	plus
Harvest21	ABC37570	654	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_42132	654	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_42132 654 Hv_44K_v2
GCCCTAGAGAGAATGAACTCAGCCCTCTTGGTTTGCTTTGGTCTGAGCTGGAAGGGATGC
ATCCAAAGCAGCCACTCTCATCAAATGTGCTTGGTGTAAATGAGCGGAGAAATCCCAAAC
AGACAGCTCCAAAGGACATTCCACCTGCAAATATCAGGCATGGGCCGCTTAGCCGGATGA
ATGAAGCCCCTGCTGTGCGTGATGAGTGGTCCGCAAACCTTGGGCGGCTGGACAGCATTA
ATGATGCAAACATGTCAGGGCTAATTTCCCAGGTTGAACCTGAGCTAGGTCATCTGAACT
ATGAGGAGCAAATGCTACTTACACAGATTCGAAGGGAGCAATTGCAGCAGGAACAAATGA
TGGTTCGTAACAATCTGGAATTTCCTGGACAATTTGCAGGGCAGGTGTTTGATTCATTGC
ACCAACACAGACAGTCCATCAATCCACCTGCTCCTGAGGTGGAGCACCTTTTGAGAGTCC
AGTTTGAACTTGAGCACCAGCAGCGACGCCAACAGCTGCAGCAGGAGCAACACCGCCAGC
AGCTTCAGCAAGAGCAGCACCAGAGGCAGCTTCAGCAAGAGCAACACCAGAGGCAGCTGC
AGCAGCGCCAAGCACAGCTACTGCAACAGCAGCAGCAGCAGCAGCAACAGCAGC

Homology of Contig U35_42132 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69990.1	1531	1e-83	protein\|GYF domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g59247.1	1534	2e-92
Arabidopsis v10	None