- Probe CUST_23817_PI390587928
- Source Contig U35_42133
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23817_PI390587928 | Hv_44K_v2 | CATGCCCATAAATAAAGCCAAGGGCGTGACGGGCGTTTCTTTTCCAGTATTTTCAAAAAA | 11 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.082 | 0.185 | 0.758 | 1.757 | 2.893 | 5.415 |
| Raw | 2.536 | 17.041 | 66.965 | 234.475 | 133.677 | 276.604 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC01351 | 457 | 6e-22 | 12 - 71 | 97 | 58 / 60 | minus | ABC01351 |
| Harvest35 | U35_42133 | 435 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (435 bp)
>U35_42133 435 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAAATACTGGAAAAGAAACGCCCGTCACGCCCTTGGCTTTAT TTATGGGCATGCCTTGATAGTAGTAGGTCGGTAGGCAGCTTACATAATTCGTACTGGGCC CGGGCCACACTTATTTATTTTACTCCCGGGTATTACACACACAAGTCCAGCTTTTAAACC GGGACGGGCTCACTGGCAGGGGGGGCATTTCAAATCGCACCGGGTGCCATTCTTAGGAAC GTTTCCACGGGTTTGTCGCCGGGCCCGGGGGCACCACGGGGGGGGGGGCGGTCCTGGTCC TGGTCCTGGTTTCGGGTTTGGTGGTCGGGTCCGGGGACGAAGCCCTTGTCCTGATCCTGG GCGCGGAACAACTTTTGGACCTCCCTTGGCGGGCTGGCGAACGGGAGCTTCTGGGCGGGG CTGCCGAGCTTGCCG
Homology of Contig U35_42133 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |