barSeed - Barley Seed Development Database

Probe CUST_2380_PI390587928

Source Contig U35_6390

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2380_PI390587928	Hv_44K_v2	AAGGAAGATGTGAGAATGTAGGGGATGCTGACAACAATGAAGCTCCCGACATTTCAAAAT	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5838.1	1844	2e-24	1040 - 1099	100	60 / 60	plus	ABC14280
MLOC	MLOC_5838.6	1688	2e-24	710 - 769	100	60 / 60	minus	ABC14280
MLOC	MLOC_5838.5	1773	2e-24	710 - 769	100	60 / 60	minus	ABC14280
MLOC	MLOC_5838.2	1899	2e-24	802 - 861	100	60 / 60	minus	ABC14280
MLOC	MLOC_5838.3	2003	2e-24	802 - 861	100	60 / 60	minus	ABC14280
MLOC	MLOC_5838.7	1607	2e-24	511 - 570	100	60 / 60	minus	ABC14280
MLOC	MLOC_5838.4	1819	2e-24	723 - 782	100	60 / 60	minus	ABC14280
JLOC1	JLOC1_3780.1	1887	8e-25	991 - 1050	100	60 / 60	plus
Harvest21	ABC14280	1441	3e-25	585 - 644	100	60 / 60	plus	ABC14280
Harvest35	U35_6390	776	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_6390 776 Hv_44K_v2
GGTGGTGCTCAAGTCAAAGCTCAACCTGTTGATACCGTGTGGCTTTGTGGCCATCACCGT
CAAATACATGACAGGCAATAATGGCTGGGTGTTTCCCCTGACTCTGTTGGGCATTATTCC
GTTGGCCGAGCGACTGGGTTTCGCCACCGAACAGTTAGCATTCTTCACGGGCCCAACAGT
TGGGGGCCTTCTGAATGCTACATTTGGCAATGCAACTGAGTTGATTATATCGATCCATGC
GCTAAGGAGCGGAAAGTTACGAGTTGTACAGCAGTCTCTGCTAGGATCCATCCTGTCAAA
CTTGCTTCTGGTTCTTGGTTGCGCATTTTTCAGCGGAGGGGTCACTTGTGGCAAAACTGA
GCAGAATTTCAGCAAGTCAGAGGCAGTAGTGAGCTCTGGGCTGCTTTTGATGGCCGTATT
GGGGTTGCTGCCTCCTACTGTGCTGCATTACACTCACTCAGAAGTCCACTCTGGAAAGTC
GGGACTAGCCTTGTCAAGGTTCAGCAGCTGCGTCATGCTTGTTGCTTATGCTTGCTACAT
CTACTTTGAATTGTCAACCAGTCGCCGTCGTGAGCAATCTAATGAAGGAAGATGTGAGAA
TGTAGGGGATGCTGACAACAATGAAGCTCCCGACATTTCAAAATGGGAGGCCATTTCCTG
GCTTGCAATTTTGACAATTTGGATCTCAGTACTCTCTGACTACTTAGTTAATGCAATCGA
CGATCTTTCCCTTGGTGTCGCAATAGGGTCATCAACACAGATGTCCATGTTTGGGA

Homology of Contig U35_6390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55940.2	418	1e-77	protein\|sodium/calcium exchanger protein, putative, expressed
Brachypodium v1_2	Bradi3g03544.1	460	1e-128
Arabidopsis v10	AT1G55730.1	441	4e-82	\| Symbols: ATCAX5, CAX5 \| cation exchanger 5 \| chr1:20831387-20833941 REVERSE LENGTH=441