barSeed - Barley Seed Development Database

Probe CUST_23809_PI390587928

Source Contig U35_30163

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23809_PI390587928	Hv_44K_v2	TAAAACATGCCAGTCTTGTTACAGTATTCTCCATGGTTGGAGTACCGGTCTATTTCTGAA	237	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.872	1.497	1.131	0.839	0.460	0.488
Raw	2637.783	3276.613	2183.670	2537.842	492.941	566.873

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355461	1987	2e-24	1914 - 1973	100	60 / 60	plus	ABC06252 ABC29924
MLOC	MLOC_1326.1	1961	2e-24	1897 - 1956	100	60 / 60	plus	ABC29924
JLOC1	JLOC1_815.2	2253	8e-25	1776 - 1835	100	60 / 60	plus
JLOC1	JLOC1_815.1	2644	8e-25	2167 - 2226	100	60 / 60	plus
Harvest21	ABC29924	312	3e-25	238 - 297	100	60 / 60	plus	ABC29924
Harvest35	U35_30163	312	3e-25	238 - 297	100	60 / 60	plus

Contig Sequence (312 bp)

>U35_30163 312 Hv_44K_v2
CTTTGATATGGGGAGTTGTTGGTACCTTTTGGTGGAAATTTCTGGGGCTCTATTGACACT
AGCTGCACTACTGTAAGGTGACGAAAACGTTTGCTCTGCAACTCGCTGAATTGTCCATGG
TTCCGAGCTCTATTGATGATATGTCAGATGTCTGTGTCAAGCCTTGGGTCATTTCCTCTT
CATCTTGTACAGTTCCCCGTTTTCTGTAATGTAGATTAGAGCTGAACAGTTCGATGCTAA
AACATGCCAGTCTTGTTACAGTATTCTCCATGGTTGGAGTACCGGTCTATTTCTGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_30163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None