barSeed - Barley Seed Development Database

Probe CUST_23808_PI390587928

Source Contig U35_30164

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23808_PI390587928	Hv_44K_v2	CGCTCATGGAGAGCTTCCTGTTCGGGCACCCGCTGGTGATGCTCCCGCTGTTCGCCGACC	295	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53147.2	2003	2e-24	469 - 528	100	60 / 60	minus	ABC48564
JLOC1	JLOC1_34116.1	1932	8e-25	1326 - 1385	100	60 / 60	plus
Harvest21	ABC29926	355	3e-25	296 - 355	100	60 / 60	plus
Harvest35	U35_30164	355	3e-25	296 - 355	100	60 / 60	plus

Contig Sequence (355 bp)

>U35_30164 355 Hv_44K_v2
GCGAGCCTCATGCGCTGGCTGGACGAGCAGCCGGCGAGGTCGGTGCTCTACGTCGCGTTC
GGGAGCGAGGCGCCGCTGACAGCAGAAAACATCCGCGAGCTGGCGGCCGGGCTGGAGCTG
TCGGGCGCGCGGTTCCTCTGGGCGCTGCGGGAAGCCAGCGCCCCGCTGCTCCCCGACGAC
GGGTTCGCAGAGCGCGTGGCCGGGCGCGGCGTCGTGCGCGCCGGATGGGTGCCGCAGGTG
CGGGTGCTGGCGCACGGCGCGGTGGGCGGGTTCCTGACGCACGCCGGGTGGAGCTCGCTC
ATGGAGAGCTTCCTGTTCGGGCACCCGCTGGTGATGCTCCCGCTGTTCGCCGACC

Homology of Contig U35_30164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None