barSeed - Barley Seed Development Database

Probe CUST_237_PI390587928

Source Contig U35_32054

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_237_PI390587928	Hv_44K_v2	ACGGTGGTGGGTGGACTGGGCAGGTTTTACTAGGGTTTTTGCTAGTTTCCGCCGTCGATC	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43743.1	1318	2e-24	1239 - 1298	100	60 / 60	minus	ABC20318
JLOC1	JLOC1_28291.1	1463	8e-25	35 - 94	100	60 / 60	plus
Harvest35	U35_32054	282	3e-25	55 - 114	100	60 / 60	plus

Contig Sequence (282 bp)

>U35_32054 282 Hv_44K_v2
CCCAGTTTGGTTCCATGTTCCCGGCCCGGCTCAACCTAGCGGCTTTTCAGCGCGACGGTG
GTGGGTGGACTGGGCAGGTTTTACTAGGGTTTTTGCTAGTTTCCGCCGTCGATCGCCGCC
GACCCCCGCCACCCGCCGACGCATCCCTCCTTCTCCTTAAGTGCTCCCGGCACAGCGTAG
GGGCCATGAGAGACCTCCACCTCCCGCTGAACCAGACCCAGAGGGTCCGCCTCGAGGCCG
CGCTCCACGAGCTCCAGACCCTCGCCCCCGCGGCCGCGTCCG

Homology of Contig U35_32054 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None