barSeed - Barley Seed Development Database

Probe CUST_23799_PI390587928

Source Contig U35_42143

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23799_PI390587928	Hv_44K_v2	ATGCTTTACATTTGTCTACTGAATGAAACTGAGGGCTCGATCCTGGTTTCAGATAAAAAA	11	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.246	0.286	0.749	1.340	1.557	1.675
Raw	494.938	834.888	1997.053	5392.077	2323.990	2715.740

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC37588	604	3e-25	12 - 71	100	60 / 60	minus	ABC37588
Harvest35	U35_42143	604	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (604 bp)

>U35_42143 604 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCTGAAACCAGGATCGAGCCCTCAGTTTCATTCAGTAGACAA
ATGTAAAGCATGTTCGTCCAGCGACGATACCGTCTGTTACATCCCGGTGATGATTTTATG
AGACATCCCGGGTATGTTCAGAATGCATGCAGAGTACAAGGATGATAGTACATGCAGAGT
AGATATCCATGCCTGCAGGAGCAGTTTCTTGGGACACTGACGACGATCGATGCATGCATT
AGCAGGACACTAGCTCATGGCCTAAAGAATGCCGGACGAACCGCGGCGGCGCCATGGAAG
GAGGTGTCCTTGAGGTGGTCGGGCGCGCTCTCGTACGAGTGCCTCCTCGCCAGCGACAGG
ATGGTCTTGTCGGCGGCGACGAAGTATGCCATCCCGGCGACGGTGCAGACGATGAGCGCC
TGGCCGGGTGGGGTTGAGATTCGCCTTGGCCCACGGCAGCATCCGGACGCTCGCCAGATG
AAGATCGACAACGCCTGGACGGAGGAGCTCACCGTCGGGACTGCAGACGCGACGGGTTGG
CGATGGCCGCCGCCTTGGCTCCGGCAAGGGTCGCCTCTCTGGAGCAGCGCTTGGCGAGGG
CGAG

Homology of Contig U35_42143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None