- Probe CUST_23796_PI390587928
- Source Contig U35_42147
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23796_PI390587928 | Hv_44K_v2 | TCCAGTTTACCATTGCCTGTACTGATCATGTATGTTTTCAGCTGTTTTCCCTTCAAAAAA | 11 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.125 | 0.204 | 0.501 | 1.797 | 2.136 | 1.931 |
| Raw | 59.683 | 149.205 | 322.084 | 1790.795 | 758.999 | 750.451 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC37598 | 327 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37598 |
| Harvest35 | U35_42147 | 327 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (327 bp)
>U35_42147 327 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAGGGAAAACAGCTGAAAACATACATGATCAGTACAGGCAAT GGTAAACTGGAGTGAAGCAAATAAACACCCCCGCAAAGGGCTACACCATTAAACACACTG TTTGCACAACGCATTGCCCTGTGAACCTACCCGCTTCCAAAAGGAATGTTTAATTGCCCG GCACGACCGCACGAAATGGGTTGGAAATGAAGAATGTTCACTTGCCCAACACGACAGGGG TTGGACGTTCGTTGGTGGCCCCCGGGGGCTGCTGGTCGAAAAAACGGACGACCACCCAGG TGATGTTTTCGGCGCTTCCCCTTCGGG
Homology of Contig U35_42147 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |