- Probe CUST_23793_PI390587928
- Source Contig U35_30170
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23793_PI390587928 | Hv_44K_v2 | TAATGGTTCGTGTGGCTGCTTCATTTTAATATAAAATGGGGCAGGGGAGCAACCCCTTTC | 284 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.160 | 0.612 | 2.552 | 3.029 | 1.152 | 1.085 |
| Raw | 315.622 | 1991.294 | 7022.243 | 12644.237 | 1790.937 | 1810.557 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_11141.1 | 2860 | 2e-24 | 36 - 95 | 100 | 60 / 60 | minus | ABC29936 |
| JLOC1 | JLOC1_7350.1 | 2296 | 8e-25 | 27 - 86 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_7349.1 | 1457 | 1e-23 | 1400 - 1457 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC29936 | 365 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus | ABC29936 |
| Harvest35 | U35_30170 | 365 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus |
Contig Sequence (365 bp)
>U35_30170 365 Hv_44K_v2 CACGGAGAAGCACACGTTCGGGTCGATCGAGTGGAGCGACGGCGAGCACTCGGTGACGAG CCCCATCGCCGTCACCTGGCCGGCGAGCCAGGTTGCCGACATGTGATCGATCGATGTGGT TTAGGCATCTTTAGCAGATGATGATGACAAAATAAAAATAAAAGTATTCGGCCTTATACC AGACATGCCTGCATGTGATGCCTGGTGTTTGGTGATCTCTCTTTTACGTGTGTTGGTCGG GTAGTCTGTAATCTCTCTTTTACGTGTGTTGGTCGGGTAGTCTGTAATGGTTCGTGTGGC TGCTTCATTTTAATATAAAATGGGGCAGGGGAGCAACCCCTTTCTTTTAAAAAAAAAAAA AAAAA
Homology of Contig U35_30170 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |