barSeed - Barley Seed Development Database

Probe CUST_23792_PI390587928

Source Contig U35_30171

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23792_PI390587928	Hv_44K_v2	CTATGTCTGAATGTAATAGAGCGGGCAACATTATGGGATGGAAGATTCATTCATAAAAAA	185	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75411.2	2770	9e-22	277 - 331	100	55 / 55	plus	ABC29937
MLOC	MLOC_75410.3	518	9e-22	399 - 453	100	55 / 55	plus	ABC29937
MLOC	MLOC_75411.1	4632	9e-22	2186 - 2240	100	55 / 55	plus	ABC29937
JLOC1	JLOC1_50306.1	4647	5e-22	2238 - 2292	100	55 / 55	plus
Harvest21	ABC29937	254	3e-25	186 - 245	100	60 / 60	plus	ABC29937
Harvest35	U35_30171	254	3e-25	186 - 245	100	60 / 60	plus

Contig Sequence (254 bp)

>U35_30171 254 Hv_44K_v2
CTTTTGTTGTCCAATTCAACAATCTTATTTCGCTTAATCAACGTCTGTTGATATCACACG
CCACAAGCAATGCTTGTGTGGTAAATAAAGAGATAATTTCTTCTTCTATTTCTTCGGAAT
CCTCAGTTAGTAGCTAGCTACTAATCGGTGTTTGGACATTATGCCTGACAAGGTAAAATT
TCTTACTATGTCTGAATGTAATAGAGCGGGCAACATTATGGGATGGAAGATTCATTCATA
AAAAAAAAAAAAAA

Homology of Contig U35_30171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None