- Probe CUST_23791_PI390587928
- Source Contig U35_30172
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23791_PI390587928 | Hv_44K_v2 | GATGGTTGTAATGATTTTCCAATCCAGTTTTGAGGATGATGATTTCATATTTGTCGCCCC | 395 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.053 | 1.283 | 0.954 | 0.546 | 0.690 | 1.345 |
| Raw | 20.786 | 20.146 | 13.093 | 10.418 | 2.693 | 10.838 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_7128.2 | 5204 | 2e-24 | 3186 - 3245 | 100 | 60 / 60 | plus | ABC18806 |
| MLOC | MLOC_7128.3 | 4320 | 2e-24 | 2302 - 2361 | 100 | 60 / 60 | plus | ABC18806 |
| MLOC | MLOC_7128.1 | 5306 | 2e-24 | 3283 - 3342 | 100 | 60 / 60 | plus | ABC18806 |
| Harvest21 | ABC29940 | 511 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30172 | 511 | 3e-25 | 396 - 455 | 100 | 60 / 60 | plus |
Contig Sequence (511 bp)
>U35_30172 511 Hv_44K_v2 TTTACTACGATTTTCCTTCGAGGACGGTGAAGATTGATATTTGGTCTCGTTCGTCGTAAC TGGCATTTATTTGCCTTGCCGACCATCCTGCTATATCACCACCCATATTCTGAGTCCTCT TATTACTTTGTATATCGGAAACTGACATGTTAATTCTTTTTCAAGATCTGTCCTTTGTTT GAACTAAAGTAATTGAATCACCTTCTATTGGACTAATAAATATCTTCTTTGTTTATTTGC CTGGATGTGAGCAGTGATGAGACAATTCTATAAATATGATCTTCCAGGTGTGATTATCAA ACGCTACGTTCTTCCTGAGCTCATATCCCGTTTGCCTTTTAAATTCTGTTAGATTGCAAT AGGAATTTTCTTATCATGCATACAATAAATACATTGATGGTTGTAATGATTTTCCAATCC AGTTTTGAGGATGATGATTTCATATTTGTCGCCCCAGTCTTAGGGTCTGCATTGTTGGAT CTGTGCTGATTGACATGTCTGAATCTGACTC
Homology of Contig U35_30172 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |