barSeed - Barley Seed Development Database

Probe CUST_23788_PI390587928

Source Contig U35_30175

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23788_PI390587928	Hv_44K_v2	GCCCAGGTTGTGAATATTGTTATTCTCACATGATTATTATTGGCTCTGCTCTATTCAAAA	375	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37778.1	3005	7e-23	825 - 881	100	57 / 57	minus	ABC19193 ABC29946
MLOC	MLOC_37777.3	3230	7e-23	1304 - 1360	100	57 / 57	minus	ABC29946
MLOC	MLOC_37777.2	3530	7e-23	2295 - 2351	100	57 / 57	minus	ABC29946
MLOC	MLOC_37777.1	3005	7e-23	2298 - 2354	100	57 / 57	minus	ABC29946
JLOC1	JLOC1_24501.1	2861	4e-23	2122 - 2178	100	57 / 57	plus
Harvest21	ABC29946	442	3e-25	376 - 435	100	60 / 60	plus	ABC29946
Harvest35	U35_30175	442	3e-25	376 - 435	100	60 / 60	plus

Contig Sequence (442 bp)

>U35_30175 442 Hv_44K_v2
GTCCATTTCGCTCTGTATTTGTTTCGTTCCATTACCTATTAGCTTTTGTGGTTGAGATCA
TAGCACAGATGGCCCTGTGATATCTTGGGAGTTGGGGAAAGGGTAGCAGGCTTGGATCTG
ACGTGATTGCTTCTCTGCCGTAGTGGAGGTGGCCCTGAGGCGAGGTCTAACCCCCTACGG
CTCGCCCTCGTTGATGTGATTGCTTCTCTGCCGCAGTGGAGGTGACCCTGAGGCGAGGTC
TAACCCCCTATGGCTCGCCCTCGTTTTGTCGTCGACACACCTGATGCTTCTGTATAGGCT
GGGCGGTCTCCACGTCCTCTCCCATCTGTAATGTAGCTAGAGTGTTTGCTTGGTCCTGCT
CCTGCATGCCCCGTTGCCCAGGTTGTGAATATTGTTATTCTCACATGATTATTATTGGCT
CTGCTCTATTCAAAAAAAAAAA

Homology of Contig U35_30175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None