barSeed - Barley Seed Development Database

Probe CUST_23786_PI390587928

Source Contig U35_30177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23786_PI390587928	Hv_44K_v2	AAATGCTAGCAGCAGACAAGAGACTAGTGAAACTCCGTTGACTCCATCAGTTGAAAAATA	381	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.178	1.158	1.250	0.767	0.449	0.341
Raw	121.449	169.857	171.339	165.465	33.417	28.709

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62296.3	5340	2e-24	1335 - 1394	100	60 / 60	minus	None
MLOC	MLOC_62296.4	5339	2e-24	1248 - 1307	100	60 / 60	minus	None
MLOC	MLOC_62296.2	5455	2e-24	1337 - 1396	100	60 / 60	minus	None
MLOC	MLOC_62296.1	5556	2e-24	1388 - 1447	100	60 / 60	minus	None
JLOC1	JLOC1_40757.3	5505	8e-25	4087 - 4146	100	60 / 60	plus
JLOC1	JLOC1_40757.2	5086	8e-25	4028 - 4087	100	60 / 60	plus
JLOC1	JLOC1_40757.1	5169	8e-25	3751 - 3810	100	60 / 60	plus
Harvest21	ABC29948	444	3e-25	382 - 441	100	60 / 60	plus
Harvest35	U35_30177	444	3e-25	382 - 441	100	60 / 60	plus

Contig Sequence (444 bp)

>U35_30177 444 Hv_44K_v2
TCCGAATGCACTGTTTCCTAGGAAATTATGTTATGAATCCAATGTTAAACGTGGTAGGAA
ACATAAAAGTTACGATGCAAATGGACATTTGCTGCCTGGTGCTGCCATTTCAATGCCAGT
ATTCGAGAGATTTGATGTTCCTGGCCAATTTGACAGCCCAATTATCGGAAAAAGGTCATT
TGAGTCCTTCCATGATTCTCGCCAATTAGGCACCATCAGCTCAGATCCTCCAAACAAGTA
TAATACCAACACAGCAAGTAGTTTGCATCAGCTATTGACAACCATGCCACCAAAAAACAG
CCTTAGCATTATGGACTCTTTCAGATATGGATCGAAACTTGATTCGTTTTTCATTTCTGA
TGACGTAGCCTCATGGTCTTCAAATGCTAGCAGCAGACAAGAGACTAGTGAAACTCCGTT
GACTCCATCAGTTGAAAAATATAG

Homology of Contig U35_30177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g33060.1	1533	6e-51
Arabidopsis v10	None