barSeed - Barley Seed Development Database

Probe CUST_23780_PI390587928

Source Contig U35_42154

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23780_PI390587928	Hv_44K_v2	TGGACAAGATGGCTGTAGGGACGAAAGCAATGTTTGCACCTTACATATCGGATGAATTAC	587	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.481	1.420	1.133	0.767	0.612	0.412
Raw	68.933	96.353	72.259	68.068	21.270	15.324

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372407	3141	2e-24	875 - 934	100	60 / 60	plus	ABC37620
MLOC	MLOC_22581.1	1389	2e-24	746 - 805	100	60 / 60	plus	None
JLOC1	JLOC1_15657.1	1285	8e-25	751 - 810	100	60 / 60	plus
Harvest21	ABC37619	650	3e-25	588 - 647	100	60 / 60	plus
Harvest35	U35_42154	650	3e-25	588 - 647	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_42154 650 Hv_44K_v2
GCGCGCCGTCGCCATTCCCCTCCGTGAACCGCCGTCGCTGCCGTTCTCCCCGACCTACTG
GTCCATCTATCCGATAATCCGAAGAAGATGACTAGGTGGGATGAAATCCTGACCCTGCCA
GTACAGAACCCAACCATATTAGAGTTCTCGGCAGCAGATATCACCTGGTCCATGGTGGAG
GGCTGGAAGGACTCAATGGACAGGCTCGCACTCATTCCGTTCTCTAGGGTGGGTGATTTT
GTCAGAGGAGAATCAAACAGCAAAGAATGCCCGACAAGATTCCACGTCGAGGCACGGAGA
AGGCGTTCTCCAACCATGACCTGCAAACCAAAAGTCGACGGGATACTTGAGTATATTCTG
TATTGGTGCTCTTTTGGTCCAGATGATTATAGAATGGGTGGTGCTGTCCGGCCTAGCAGA
TCCTCTTACGGAAAGAGGAAAACACCCGCTGGTCGCCCTAATACAAAGAGGGGGGTGTGT
TTGCCATTTTATTGTGAAGCGTTTGATTGCTGAACCATCATTGGCTCTTGTGATATATAA
CCACAACAAGCATATAGATAAGAAAGGCACACCATGTCATGGTCCCATGGACAAGATGGC
TGTAGGGACGAAAGCAATGTTTGCACCTTACATATCGGATGAATTACTTC

Homology of Contig U35_42154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12520.1	836	2e-91	protein\|zinc ion binding protein, putative, expressed
Brachypodium v1_2	Bradi2g36937.1	901	4e-99
Arabidopsis v10	AT4G13970.1	778	3e-75	zinc ion binding \| chr4:8070696-8074134 REVERSE LENGTH=778