- Probe CUST_23779_PI390587928
- Source Contig U35_42155
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23779_PI390587928 | Hv_44K_v2 | TTTGTATGTTTTCAGCTTGCGGAACTTCGTACTTGCTGAATGCATCTGGAAGTCAGGCAC | 52 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.209 | 1.529 | 1.377 | 0.976 | 0.337 | 0.352 |
| Raw | 1255.194 | 2518.047 | 1927.427 | 2153.896 | 266.878 | 296.296 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372407 | 3141 | 2e-24 | 3001 - 3060 | 100 | 60 / 60 | plus | ABC37620 |
| MLOC | MLOC_81069.1 | 1529 | 2e-24 | 629 - 688 | 100 | 60 / 60 | minus | ABC37620 |
| Harvest21 | ABC37620 | 580 | 3e-25 | 53 - 112 | 100 | 60 / 60 | minus | ABC37620 |
| Harvest35 | U35_42155 | 580 | 3e-25 | 53 - 112 | 100 | 60 / 60 | minus |
Contig Sequence (580 bp)
>U35_42155 580 Hv_44K_v2 TTTTTTTTTTTTTTTTTGCTGCAAGGATAGCATTGGTTGCTCGTTGCCTTCCGTGCCTGA CTTCCAGATGCATTCAGCAAGTACGAAGTTCCGCAAGCTGAAAACATACAAACCTCACAA ACAAAGTGGGGGTTTCAGATAAGAAAAAGAGTCACGTCTACTCGTCTATCCGATCAGCTA ATCTAACCTCGACAGAAGAACCATTCGGTCATCAGTTTCTTTGCGCGGCTGCAGTTTCCT TGTCGCCGGCACTAGCTTGCACCGCCGCAGTTCCTTCATCACCATCCCAAAATTATCTGC CCCCTCTTTCCTGGCGAGCAGGACTATCCTGAGCACCATCAAGTTCCTGCACACAAGTCG CTTGACTGTTCTCACTTTCAGAAGGTTGCGTGGTTTGCGCCGCTGCAGTTTCTTCCTCGT CATCAGAAATTTCCATCACTAGAGTTTCTACATCATCGTCAGAAGTTTCTCTGCACGCTC TTTTGTGGCGAGCAGGGCTGTCCTGACAGCGATCAAGTTCCCGAAATGAAGTTGCTTGGC TGCTCTCAGCTTCAGAAACCTGCATGACTTGCGTTGCTGT
Homology of Contig U35_42155 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |