barSeed - Barley Seed Development Database

Probe CUST_23777_PI390587928

Source Contig U35_42158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23777_PI390587928	Hv_44K_v2	TCATGCTAATGATGGATCTCATAAGGCAGCTGCAAATACAAACAAAATGAAGGGGGAAGA	351	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.379	1.584	1.256	0.701	0.551	0.522
Raw	263.601	234.293	187.479	145.821	45.997	47.130

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9787.4	3190	7e-23	663 - 722	98	59 / 60	plus	ABC10037 ABC37003
MLOC	MLOC_9787.1	4099	7e-23	1363 - 1422	98	59 / 60	plus	ABC10037 ABC37003
MLOC	MLOC_9787.2	4178	7e-23	1296 - 1355	98	59 / 60	plus	ABC10037 ABC37003
MLOC	MLOC_9787.3	3865	7e-23	1296 - 1355	98	59 / 60	plus	ABC10037
JLOC1	JLOC1_6347.2	3736	4e-23	1246 - 1305	98	59 / 60	plus
JLOC1	JLOC1_6347.1	4052	4e-23	1249 - 1308	98	59 / 60	plus
Harvest21	ABC37623	411	3e-25	352 - 411	100	60 / 60	plus
Harvest35	U35_42158	411	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (411 bp)

>U35_42158 411 Hv_44K_v2
AGTGGGTGCAGCAAGACCATAGCCTTACCAGCAGTGAAGGAGAGCTGCTCCTGTNAGACC
TGTGAATGGTTATAGGCCCTTAAAGGGTGCAGGGACACAACAAACATAGTGGACCATGTG
TTCAAGTTGTGGCATGAGATATGAATGCTACACTGCGATGTTGAAGAAAGCTATACGTNG
TCAGAGTTGTTTGAAGCCTTTNATAGCACATGATATAAATGAGCAAACTGTTCCTTNCGG
GGCAGAACGACAGTATGCTGGGGTAAAAAATGCAAGGGCACCACAGAATTTTGCAGGCTG
GCAGACAAATGCCACAGGTCAACAGGCTTGGAACAAGGCAACTNCAGGGGTTCATGCTAA
TGATGGATCTCATAAGGCAGCTGCAAATACAAACAAAATGAAGGGGGAAGA

Homology of Contig U35_42158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None