barSeed - Barley Seed Development Database

Probe CUST_23776_PI390587928

Source Contig U35_16962

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23776_PI390587928	Hv_44K_v2	TAGGATCAAAGTAATCGACCAGACAGGGTTGAATGAGAGATTTCATCAAATTCTTCAAAA	753	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.763	3.172	1.215	0.757	0.877	0.781
Raw	30.244	42.490	13.259	11.185	3.499	3.421

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20078.1	880	3e-22	825 - 880	100	56 / 56	plus	ABC05950
JLOC1	JLOC1_13928.1	1209	8e-25	908 - 967	100	60 / 60	plus
Harvest21	ABC05951	847	3e-25	754 - 813	100	60 / 60	plus
Harvest21	ABC05950	749	6e-22	18 - 77	97	58 / 60	minus	ABC05950
Harvest35	U35_16962	835	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_16962 835 Hv_44K_v2
GAGGCCAGATAAGGCGCCACGGCCACTTGCCGCCCAAAGCCTCTGCCTGCCATCAATGGA
GATCACCGCCTCATGGCGCTTCCTCCCCGTCGCGTCCTCGCTGCCACCCGCTCTGCTCCT
AGCCAGGCGGCAGGCGTCGTGCCCCTGGTCTCTTCAACAGCCGGCGATCTCCAAGTCCAG
GATCCTCTGCCGTCTCCATGACAAGCCTTTCCCTACCGCCCAGAGCTCGCAGCTGCAGAA
GCTGGCCTCCGTGTTGCAGTGCGGCGCCATCTGGGCAGCGGTGCAAGCCCCGGCTGCTCT
GGCGACGGTGAGCGGGGAGGAGGACATCGACATCCTGGGGATCCTGCCGCCGGTGGCCGC
GATCGCCTTCTTCTACCTCTTCGTTGCTCCCCCGATTATCATGAACTGGATGAGGCTGAG
GTGGTTCAAGCGCAAGTTCATCGAGACGTATCTGCAGTTCATGTTCACGTACCTCTTCTT
CCCCGGTTTGATGCTCTGGGCACCGTTTGTCAACTTCAGAAAGTTCCCAAGGGATAAAAC
CATGAAGTACCCTTGGTCCAAACCGAAGGAAGGCACCCCTCTGTTCAAGGACAGATACCC
ACAAATAGACTCATTCAAAGAGAAGTACTTCTAGGGAAGCACTGTATATATGTAACAAAT
ACAGATATGGGTCATCAGAAGCGACGTTTTCTTTTACAGATCAACATGCCTCTGTAACAC
ATAATCTTTTCACATGTTCTACTTGGATGACCGTAGGATCAAAGTAATCGACCAGACAGG
GTTGAATGAGAGATTTCATCAAATTCTTCAAAAACAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16962 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28090.1	198	9e-73	protein\|expressed protein
Brachypodium v1_2	Bradi4g30000.1	192	2e-97
Arabidopsis v10	None