barSeed - Barley Seed Development Database

Probe CUST_23772_PI390587928

Source Contig U35_16966

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23772_PI390587928	Hv_44K_v2	ATCAAGGACCAATATCATCAACCATCAAGAAAGTGAAGCTTCTGTCCCTGTCCACCTGCT	370	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252246.1	986	2e-24	399 - 458	100	60 / 60	plus	ABC06258 ABC06261
MLOC	MLOC_57217.3	3430	2e-24	2651 - 2710	100	60 / 60	plus	ABC06258 ABC06261
MLOC	MLOC_57216.1	1464	2e-24	729 - 788	100	60 / 60	plus	ABC06258 ABC06261
MLOC	MLOC_57217.1	4866	2e-24	4131 - 4190	100	60 / 60	plus	ABC06258 ABC06261
JLOC1	JLOC1_37040.1	4724	8e-25	3933 - 3992	100	60 / 60	plus
Harvest21	ABC49148	548	3e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC06261	1119	3e-25	367 - 426	100	60 / 60	plus	ABC06261
Harvest21	ABC06260	668	3e-25	362 - 421	100	60 / 60	plus
Harvest21	ABC06259	576	3e-25	376 - 435	100	60 / 60	plus
Harvest21	ABC06257	617	3e-25	371 - 430	100	60 / 60	plus
Harvest35	U35_16969	699	3e-25	393 - 452	100	60 / 60	plus
Harvest35	U35_16968	1142	3e-25	377 - 436	100	60 / 60	plus
Harvest35	U35_16967	578	3e-25	376 - 435	100	60 / 60	plus
Harvest35	U35_16966	617	3e-25	371 - 430	100	60 / 60	plus

Contig Sequence (617 bp)

>U35_16966 617 Hv_44K_v2
GCTCATTCTTCTCCCCCACTTGGCCGCGAAAACCCTAGGAGAGCTAATCCCCCCATGGCG
ACGGCGAGGCTGCGATCCGCGTCGGCGTCCTCCCTCCGCGGGATCCTCCTCCGCCGCTCC
TCCGCGCCCCCGCGCGCCGTCTCAGATTTTCAGGTTCCTGGATCTGCAACATGGAGGCAT
TTCTCAACATGCAAGCCTAATCCTCTTGCAAAAGAGGATAGCTTTGGCTCAATGGGTTCT
CTGTACAGCCAGACAAGATGGGCTTCTCAATCCACTGCTGTCAAAGAAACTGACCCCAGT
GGCGGCAAGATAAGCATTGGGCCCAAATCCAAGCAGATCAAGGAGGACGACAAGGATGAT
GGACTGGTTTATCAAGGACCAATATCATCAACCATCAAGAAAGTGAAGCTTCTGTCCCTG
TCCACCTGCTGCCTCTCCGTGTCGCTAGGCCCTGTGATTACATTCATGACCTCGCCCGAC
ATGAATGTGATCCTCAAGGGAGGAGTCGCATCCACCGTGATCTTCCTCAGCGCCACCACA
ACCGCAGCCCTGCACTGGTTCGTGAGCCCGTACATCCACAAGCTGAGGTGGCGACAGGGT
TCAGACAGCTTCGAGGC

Homology of Contig U35_16966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63680.1	261	8e-77	protein\|expressed protein
Brachypodium v1_2	Bradi1g01227.1	265	4e-88
Arabidopsis v10	None