- Probe CUST_23771_PI390587928
- Source Contig U35_16967
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23771_PI390587928 | Hv_44K_v2 | ATCAAGGACCAATATCATCAACCATCAAGAAAGTGAAGCTTCTGTCCCTGTCCACCTGCT | 375 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.898 | 0.989 | 1.521 | 1.426 | 0.844 | 0.675 |
| Raw | 135.835 | 206.103 | 308.727 | 448.779 | 92.767 | 82.721 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252246.1 | 986 | 2e-24 | 399 - 458 | 100 | 60 / 60 | plus | ABC06258 ABC06261 |
| MLOC | MLOC_57217.3 | 3430 | 2e-24 | 2651 - 2710 | 100 | 60 / 60 | plus | ABC06258 ABC06261 |
| MLOC | MLOC_57216.1 | 1464 | 2e-24 | 729 - 788 | 100 | 60 / 60 | plus | ABC06258 ABC06261 |
| MLOC | MLOC_57217.1 | 4866 | 2e-24 | 4131 - 4190 | 100 | 60 / 60 | plus | ABC06258 ABC06261 |
| JLOC1 | JLOC1_37040.1 | 4724 | 8e-25 | 3933 - 3992 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49148 | 548 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06261 | 1119 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | ABC06261 |
| Harvest21 | ABC06260 | 668 | 3e-25 | 362 - 421 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06259 | 576 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06257 | 617 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16969 | 699 | 3e-25 | 393 - 452 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16968 | 1142 | 3e-25 | 377 - 436 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16967 | 578 | 3e-25 | 376 - 435 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16966 | 617 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus |
Contig Sequence (578 bp)
>U35_16967 578 Hv_44K_v2 TGGCCGCGAAAACCCTAGGAGAGCTAATCCCCCCCATGGCGACGGCGACGGCGACGGCGA GGCTGCGATCCGCGTCGGCGTTCTCCCTCCGCGGGATCCTCCTCCGCCGCTCCTCCGCGG CCGCCTCCGCGCCCCCGCGCGCCGTCTCAGATTTTCAGGTTCCTGGATCTGCAACATGGA GGCATTTCTCAACATGCAAGCCTAATCCTCTTGCAAAAGAGGATAGCTTTGGCTCAATGG GTTCTCTGTACAGCCAGACAAGATGGGCTTCTCAATCCACTGCTGTCAAAGAAACTGACC CCAGTGGCGGCAAGATAAGCATTGGGCCCAAATCCAAGCAGATCAAGGAGGACGACAAGG ATGATGGACTGGTTTATCAAGGACCAATATCATCAACCATCAAGAAAGTGAAGCTTCTGT CCCTGTCCACCTGCTGCCTCTCCGTGTCGCTAGGCCCTGTGATTACATTCATGACCTCGC CCGACATGAATGTGATCCTCAAGGGAGGAGTCGCATCCACCGTGATCTTCCTCAGCGCCA CCACGACCGCAGCCCTGCACTGGTTCGTGAGCCCGTAC
Homology of Contig U35_16967 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g63680.1 | 261 | 5e-66 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g01227.1 | 265 | 6e-76 | |
| Arabidopsis v10 | None |