barSeed - Barley Seed Development Database

Probe CUST_23770_PI390587928

Source Contig U35_16968

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23770_PI390587928	Hv_44K_v2	TCTGTTTGCGATTTCTCTTAAAGCTATGTAAAACATTGTTCCATTTGGTATCTGTTGTGC	1063	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57217.3	3430	2e-24	3338 - 3397	100	60 / 60	plus	ABC06258 ABC06261
JLOC1	JLOC1_37040.1	4724	8e-25	4620 - 4679	100	60 / 60	plus
Harvest21	ABC06258	330	3e-25	20 - 79	100	60 / 60	minus	ABC06258
Harvest35	U35_16968	1142	3e-25	1064 - 1123	100	60 / 60	plus

Contig Sequence (1142 bp)

>U35_16968 1142 Hv_44K_v2
CTTCTCCCCCACTTGGCCGCGAAAACCCTAGGAGAGCTAATCCCCCCCATGGCGACGGCG
ACGGCGACGGCGAGGCTGCGATCCGCGTCGGCGTCCTCCCTCCGCGGGATCCTCCTCCGC
CTCTCCTCCGCGCCCCCGCGCGCCGTCTCAGATTTTCAGGTTCCTGGATCTGCAACATGG
AGGCATTTCTCAACATGCAAGCCTAATCCTCTTGCAAAAGAGGATAGCTTTGGCTCAATG
GGTTCTCTGTACAGCCAGACAAGATGGGCTTCTCAATCCACTGCTGTCAAAGAAACTGAC
CCCAGTGGCGGCAAGATAAGCATTGGGCCCAAATCCAAGCAGATCAAGGAGGACGACAAG
GATGATGGACTGGTTTATCAAGGACCAATATCATCAACCATCAAGAAAGTGAAGCTTCTG
TCCCTGTCCACCTGCTGCCTCTCCGTGTCGCTAGGCCCTGTGATTACATTCATGACCTCG
CCCGACATGAATGTGATCCTCAAGGGAGGAGTCGCATCCACCGTGATCTTCCTCAGCGCC
ACCACAACCGCAGCCCTGCACTGGTTCGTGAGCCCGTACATCCACAAGCTGAGGTGGCGA
CAGGGTTCAGACAGCTTCGAGGCAGAGATAATGTCGTGGCTGGCTACACCCCTCAAGAAG
ACGATCAAGTTTGCTGACATCAGGCCTGCAGAGACTAACCGGCCTTTCGTCACCTTCAGG
GCCGAAGGGAACTTCTACTTCGTCGACGCTGATCACTTCTCCAACAAGGCCTTGCTGGAG
AGGCTCACGCCTAAGCTCCCTAACGAGTCTGCGTTCAAGAACTTGTGATGAAGCTACTGT
TTTGACCGCATTTGTGCTCTTGAACCTGGCTGAGCTATCCGGTCCTTTTTTTCTGTAGCT
AATACTTGTGAGAATATGTAGTATACGGTATCGCTGTTATTTTATTCCATGCGAAGATTT
GCGAATCGCTGGCTTGGAATATTTTTAACACCTGGATGGTTTTGAATAAGTAGAAGCAAC
ATGCCCCTCTGTGTGATTGACAGTTTAGAATCCCAGTGGTATCTCTGTTTGCGATTTCTC
TTAAAGCTATGTAAAACATTGTTCCATTTGGTATCTGTTGTGCCTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_16968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63680.1	261	5e-122	protein\|expressed protein
Brachypodium v1_2	Bradi1g01227.1	265	3e-137
Arabidopsis v10	AT2G35790.1	238	3e-70	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). \| chr2:15040735-15041976 FORWARD LENGTH=238