barSeed - Barley Seed Development Database

Probe CUST_23766_PI390587928

Source Contig U35_28944

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23766_PI390587928	Hv_44K_v2	TCATGTAAATTCCTTGCCAGGCAAATGATGTGAAGCTAGAATCCTTTTTAATGAGAGCAT	407	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4824.1	4119	7e-23	3127 - 3186	98	59 / 60	plus	ABC04928
JLOC1	JLOC1_3057.1	2088	4e-23	1078 - 1137	98	59 / 60	plus
Harvest21	ABC04929	818	3e-25	756 - 815	100	60 / 60	plus
Harvest35	U35_28944	470	3e-25	408 - 467	100	60 / 60	plus

Contig Sequence (470 bp)

>U35_28944 470 Hv_44K_v2
GGCCAAGACGACGGCACGCTGGCCTCCTTCGTGGGCTTCCGCGTGCAGCATGACAATGCC
CGCGGGCCCATGAAAGGTGGCATCCGCTACCACCCCGAGGTGAGCCAATCTCGTGGGATT
GTCTTGCTACTTCCGTCAATTCGATTGCGATTTCTCCTGAAAGGCTAAAACAAGACGCGT
CCAAATAGCTTTCAAAAAGGCTAAGCAGATTGACGCACGCAAAAAAAAAAAAGAGCTGAA
TTGACTGCCAACTTGCCATGCTTTCACATCCATTGTTCATGGCCAACGATGTCATTGTTT
CTTTTCATAGATGGGGATCCACGGTACTTTGCATTCTTAGGTTATTTTTGTATATGCTGG
GTCCAGCTTTACCGTTTGACTTTCGCCTGTAAGCTTAGTTTAGGGCGTCATGTAAATTCC
TTGCCAGGCAAATGATGTGAAGCTAGAATCCTTTTTAATGAGAGCATGCA

Homology of Contig U35_28944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None