barSeed - Barley Seed Development Database

Probe CUST_23761_PI390587928

Source Contig U35_16970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23761_PI390587928	Hv_44K_v2	GTTGGGATCCTGTATGTTCATGGTGTATTTGGTGATAAAGTCAGGTAGGTTGGTAAAAAA	1567	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371821	1723	7e-23	1646 - 1702	100	57 / 57	plus	ABC07905 ABC07906
MLOC	MLOC_66442.1	2686	7e-23	1224 - 1280	100	57 / 57	minus	ABC07905 ABC07906 ABC48566
JLOC1	JLOC1_43783.1	1410	4e-23	1303 - 1359	100	57 / 57	plus
Harvest35	U35_16970	1638	3e-25	1568 - 1627	100	60 / 60	plus

Contig Sequence (1638 bp)

>U35_16970 1638 Hv_44K_v2
GGCCCCCCTGTCCTACCCAACGCTCCAATGCGGCACTAAGCGAAATCTCCCCCACAGAAC
GCCACCGCTGTGCCGCCGTGCCGCCCCGGCCGACGCCCACCCCGGCCGCCTCACCCCGCG
CGTCGCCGTCCCCGTTCCGCAATCTCGGAGGTTGGATTTTTCAGTGCCAAACCGTGCAAC
TTAGTTGGGTGTCCTACAATGGAGCTTGACAGTCTAAGAGAGGCCTTTGACCGAGTTGTT
GAAAAGCGCGTGTTGTCTTCTACAAAAGTTCAGGAAGCCATTGATCAGATAGTGAATGAA
GTTAAGCAGGTAATATCCAAGATGCAGATGATGGACACAGATTCCATGGACAGTTGTGAC
CATTCATCCATCCTTGCAGAATTGAAGGCCAAGCTGAACGAAATGGTGACACTGAACCAA
CTTGAAGGCTGTCAAAAGGAATTGAATGTTGCACTGAGCAAATATCTCAAGGTTCTCGAG
AAGTCTTTTAATACAGATGTATCAAAGGCATACAGAAATGTGGATTTTGAGGACAGCACA
GTAAATAAGATAATAGCGAATCATTTCTATCGCCAGGGCCTCTTTGATCTCGGAGACTCC
TTTGTCCACGAGTGCGGTGAATCAGACGAGACTTACCTGAAATTGCCATTCCAGGAGATG
TATGGAATACTTGAAGCGATGAAAGCAAGAAACCTTGAGCCTGCGCTCACTTGGGCTGCC
AATAACCATGATAAGCTGTTGCAGAATAGCTCAATGCTCGAGTTGAAGCTCCATTCTCTT
CAGTTTGTTGAGATACTCACCAAAGGAAGGAGAGATGATGCTTTACAATATGCAAGGACT
CACTTGGTGCCCTTTGCCTCCTTAAACAAGGCAGAGATCCAGAAGCTAATGGCTTGCCTG
ATCTGGGTTGACCGGCTTGAACAGTCCCCATATGCTGAGTTTGTCTCATCGACGCATTGG
GAGAAGCTAGCCGAGGAGCTAATCCATCAGTTCTGCAGCCTCTTAGGTCAGCCTAGCGAT
AGCCCACTGAGTGTAACCGTATCAGCTGGTTTTCAAGGGCTACCAACCTTGTTGAAGCTA
ACCACGGTAATGGCTGCCAAGAAGCAGGAGTGGCAGACCATGAAACAGCTTCCAGTCCCC
ATAGACATCGGACCAGAGTTCCAGTACCACTCAGTCTTCGTATGCCCGGTGCTCCGGGAG
CAGTCGAGCGACGAGAACCCTCCGATGCTGATGCCCTGTGGACACGCCGTATCAAAGCAG
TCGATCACGAAGCTATCAAAGAGCAGCTCCAGACCTTTCAAGTGCCCTTACTGCCCCTCG
GAGGCGGTAGCTTCGCAGTGCAAGCAGCTTCATTTCTAAGTGTTTCGTTTTTCCCAGATC
AAATTCTGTTTGTACAAGCCCTTTCTTGGTGTTTCTGTTTCACCCATACGATAACTCTGC
CTGTACTATAATCTTGTATCTTTATTTAATCCTGGGTGTTCATCTGTACAGTAGCAAATT
CCAGTGTGTTGGAAATATCTCTTGGGACAGAATACAGAAATAAGTTTCACTGCTGGCTTA
GTCTGTCGTTGGGATCCTGTATGTTCATGGTGTATTTGGTGATAAAGTCAGGTAGGTTGG
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_16970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38940.2	387	0.0	protein\|RMD5 homolog A, putative, expressed
Brachypodium v1_2	Bradi1g37250.1	387	0.0
Arabidopsis v10	AT4G37880.1	388	1e-135	LisH/CRA/RING-U-box domains-containing protein \| chr4:17810183-17811349 FORWARD LENGTH=388