barSeed - Barley Seed Development Database

Probe CUST_2375_PI390587928

Source Contig U35_6395

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2375_PI390587928	Hv_44K_v2	AATCATCGATCCATGTGCGATAGGTTGCTTCTTCTACTTCAGCCGCTAGTTTCCGGATTT	747	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.363	0.303	1.017	3.675	1.719	2.339
Raw	2.927	2.872	19.253	94.679	19.776	27.293

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68984.1	1055	2e-24	217 - 276	100	60 / 60	minus	ABC29847
JLOC1	JLOC1_45694.1	1037	8e-25	176 - 235	100	60 / 60	minus
Harvest21	ABC29847	278	3e-25	162 - 221	100	60 / 60	plus	ABC29847
Harvest35	U35_6395	864	3e-25	748 - 807	100	60 / 60	plus

Contig Sequence (864 bp)

>U35_6395 864 Hv_44K_v2
CAAAGTATTGCTAGGGAACAAATCAGGCGACGTGGTCATCATCCGACGAGAGGACAGAGT
CCCATATGCCATTATTGCAGCTGCAGAGGTCGCAATTCCTCTTCGCCTTCGTATAAGCGA
AGCGCCTGTTCGTTTCACATACCCCGCTCTCGCCACGACCGTGCGCGCGCTCCAGCCTCC
AGGGGTAGCAAAGCACGCAAGAATCGTCGATAGGGAGGAGGAAGGCGAGGAGGAGCGCCA
TGGCGAGCGTGGTCATCGAGACCCACGACGCTGCGGCAGCCGGCGGCGGGGACGTGGTGT
TCTGCGTCGTCATCCTGTGTATGTCCGTGCTGTCCCTGGTCATCCTGGCGGCCTCCTCTG
CAGTCGGCTGCGGCGACGGGGCAGGGGAAGGCAGGCGGCGGCAGCGCTGCGGCTCGCGCG
GGAACGGGCCGGTGTTCGTGGGCGGCAGGGGCTGCGCCTGCGGCGGCTGCCGCGCTGGCG
CCGGTGTCTGCGGCACCTACCTCTCCTGATCACCGTCGACCGGGCACGCAGCGCGCGCAC
GCTCCACATGTGCATACAAGCATGTAGCATAACGTAAGGAGGAGGACGAGGAGCTCGATC
GATCGGAGCTTTCGCAAGGCTGGCGCATGGCTATTCCGTTCTTCTTTTTCCTCTGTTTGT
ACGTACATATTACTACTACTGATAGCTGCACATCCTGTGATGTGAATAAGCTGCGAGAGC
ATGGAGTGTTTTATCTGTTCCTTGAATAATCATCGATCCATGTGCGATAGGTTGCTTCTT
CTACTTCAGCCGCTAGTTTCCGGATTTGGGTTCGGTTTCGATGGAATAGTGGCTGACGCC
CATATGCTCCTAAAAAAAAAAAAA

Homology of Contig U35_6395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None