barSeed - Barley Seed Development Database

Probe CUST_23755_PI390587928

Source Contig U35_16976

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23755_PI390587928	Hv_44K_v2	TTGTTTGGACGTGGAACTTCACTGCATGTGCAATTGCAATGTCTCTTTCATGGCAAAAAA	1394	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38555.1	1520	3e-21	20 - 73	100	54 / 54	minus	ABC06947
JLOC1	JLOC1_25076.1	1484	2e-21	1355 - 1408	100	54 / 54	plus
Harvest35	U35_16976	1465	3e-25	1395 - 1454	100	60 / 60	plus

Contig Sequence (1465 bp)

>U35_16976 1465 Hv_44K_v2
CCGCGACCGAAATAGATCCAGCGCTCGCTGCTGCTCGTCTCTGTCTTCTTGGCCGGGAAG
AAAGGAAGGGAAAGGAAGCGGCGGAGACCAGGCGATGGCGGCGCCGCTGGAGTTCCTGGA
GGCGCAGGGCTCGACCCGGCCGGAGCTGGCGGAGTGGTACGCCGCCCTCGCCGATCTCTA
CCAGCGGAAGCTCTGGCACCAGCTCACCCTCAAGCTCGACCAGTTCCTCGCCCTCGCCGT
CGTCCAGGCGGGCGATGCTCTGATTCAGCTTTATACTCATTTCATCTCTGATTTTGAGAG
CAAGATCAATCTTCTTAAATTTGCTCACTTCGCGGTAGTAGTTTCACGCCAGTACTCAGA
TAAAGATGCCGGTATAAGCTATCTTGAGGGCGTAATTTCGAAGCTGCATGATACCAAGGA
ATCACGGATTGAAGAGCCCGTTCTGTATGTGAAGATGCAGATTGCAAGTTTTCTTCTTGA
GAAAGGGAATCAAAAGGAGTGTAAGAAACTGGTAGACGAGGGGAAAACCACATTGGATAG
TATGGACGATGTTGATCCTTCAGTACATTCGACCTATTATTGGTTATGTTCTCAGTACCA
TAAAGTGTGTCAAGACTATTCTGAATTTTATAAAAATGCTCTTCTCTATCTTGCATACAC
AACAGTGGAGTCACTTTCAGAACCATTCAAACAGAACCTGGCGTTTGACCTCTCACTTGC
TGCTTTATTGGGTGACAACATATACAACTTTGGGGAGTTGCTTGCCCATCCAATTATCCA
TAGCCTTGTGGGAACATCGGTGGAGTGGATTTATCATATATTGCAAGCGTTCAACTCTGG
CAATCTAGCATCCTACCAGGAACTCTGCAAAGTTCACGCCACCGCTTTGAGTGCGCAGCC
TGCTTTGGTACAGAAGGAAAGGGAACTTCTTGAAAAGATCAATGTCCTTTGCTTGATGGA
AATCATTTTCAGTCGAGCATCTCAAGACCGCACAATCCCATTGAGCACTATAGCTGAACA
GACCAGACTCTCAGTTGAAGATGTGGAGTATCTACTAATGAAGAGCCTCTCTGCTCATCT
TATTGAAGGCATAATTGATGGGGTCGACGGGACTGTCCATGTTTCGTGGGCGCAACCGAG
GGTCCTTGGAATTGACCAGGTGAAGTCCCTGCGTGACCGGCTGGACACCTGGGTCGGGAA
GGTGCACACCACTTTGCTATCTGTCGAAGCCGAGACGCCCGACCTGGTAGCTTCTTGATG
TTCTTTGGTCCCCTGTTGAACGGTGTCTGTGACCTTACACAAAGCCAACGTGGAATTTGA
AATTTGATTTTGATTCTTAGGCTGCAACCTTGCAAAACCTAGAAAGATTTGTAAACATGA
TGATCAGTCTTGTTTTGTTTGGACGTGGAACTTCACTGCATGTGCAATTGCAATGTCTCT
TTCATGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16976 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g32800.2	386	protein\|proteasome subunit, putative, expressed
Brachypodium v1_2	Bradi5g20220.1	388
Arabidopsis v10	AT4G19006.1	386	Proteasome component (PCI) domain protein \| chr4:10409349-10411347 REVERSE LENGTH=386